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GENE CARD

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Gene Card

Best human hits

ALYREF; PABPC1L; POLDIP3

Species

P.mammillata

Unique Gene ID

Phmamm.g00012633

Gene Model ID

Phmamm.CG.MTP2014.S892.g12633

Location

S892:38075..42781

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S892.g12633.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

66 results

AHC0AAA17YD10

Plate: Plate_17_D10

AHC0AAA21YL20

Plate: Plate_21_L20

AHC0AAA22YD06

Plate: Plate_22_D06

AHC0AAA22YL16

Plate: Plate_22_L16

AHC0AAA5YM13

Plate: Plate_5_M13

AHC0AAA6YA16

Plate: Plate_6_A16

AHC0AAA9YE20

Plate: Plate_9_E20

AHC0AAA33YK19

Plate: Plate_33_K19

AHC0AAA42YH01

Plate: Plate_42_H01

AHC0AAA43YO01

Plate: Plate_43_O01

AHC0AAA46YF18

Plate: Plate_46_F18

AHC0AAA50YC10

Plate: Plate_50_C10

AHC0AAA58YD07

Plate: Plate_58_D07

AHC0AAA61YI22

Plate: Plate_61_I22

AHC0AAA63YG19

Plate: Plate_63_G19

AHC0AAA74YJ23

Plate: Plate_74_J23

AHC0AAA102YN21

Plate: Plate_102_N21

AHC0AAA105YC02

Plate: Plate_105_C02

AHC0AAA105YJ20

Plate: Plate_105_J20

AHC0AAA116YH16

Plate: Plate_116_H16

AHC0AAA121YJ20

Plate: Plate_121_J20

AHC0AAA126YO21

Plate: Plate_126_O21

AHC0AAA135YO21

Plate: Plate_135_O21

AHC0AAA144YH09

Plate: Plate_144_H09

AHC0AAA144YI06

Plate: Plate_144_I06

AHC0AAA145YC03

Plate: Plate_145_C03

AHC0AAA153YL07

Plate: Plate_153_L07

AHC0AAA154YI06

Plate: Plate_154_I06

AHC0AAA86YD10

Plate: Plate_86_D10

AHC0AAA92YJ01

Plate: Plate_92_J01

AHC0AAA94YF07

Plate: Plate_94_F07

AHC0AAA94YK24

Plate: Plate_94_K24

AHC0AAA98YH14

Plate: Plate_98_H14

AHC0AAA160YC18

Plate: Plate_160_C18

AHC0AAA164YD23

Plate: Plate_164_D23

AHC0AAA171YI17

Plate: Plate_171_I17

AHC0AAA172YD05

Plate: Plate_172_D05

AHC0AAA172YM03

Plate: Plate_172_M03

AHC0AAA175YB01

Plate: Plate_175_B01

AHC0AAA175YO19

Plate: Plate_175_O19

AHC0AAA183YB22

Plate: Plate_183_B22

AHC0AAA184YF24

Plate: Plate_184_F24

AHC0AAA185YK02

Plate: Plate_185_K02

AHC0AAA186YP19

Plate: Plate_186_P19

AHC0AAA187YC03

Plate: Plate_187_C03

AHC0AAA187YC07

Plate: Plate_187_C07

AHC0AAA192YO20

Plate: Plate_192_O20

AHC0AAA193YD09

Plate: Plate_193_D09

AHC0AAA196YD07

Plate: Plate_196_D07

AHC0AAA198YP04

Plate: Plate_198_P04

AHC0AAA207YA24

Plate: Plate_207_A24

AHC0AAA215YB06

Plate: Plate_215_B06

AHC0AAA235YE14

Plate: Plate_235_E14

AHC0AAA239YF23

Plate: Plate_239_F23

AHC0AAA239YJ23

Plate: Plate_239_J23

AHC0AAA244YN10

Plate: Plate_244_N10

AHC0AAA245YL05

Plate: Plate_245_L05

AHC0AAA249YL09

Plate: Plate_249_L09

AHC0AAA250YB09

Plate: Plate_250_B09

AHC0AAA256YK09

Plate: Plate_256_K09

AHC0AAA262YJ16

Plate: Plate_262_J16

AHC0AAA263YE10

Plate: Plate_263_E10

AHC0AAA267YH17

Plate: Plate_267_H17

AHC0AAA268YD12

Plate: Plate_268_D12

AHC0AAA92YL03

Plate: Plate_92_L03

AHC0AAA98YJ16

Plate: Plate_98_J16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
PDIP3_RRM CDD PDIP3, RNA recognition motif
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain
PDIP3 PANTHER Polymerase delta-interacting protein 3

GOSlim

22 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
nuclear speck Orthology cellular component
extracellular exosome Blast cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
regulation of gene expression Orthology biological process
mRNA processing Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
positive regulation of gene expression Orthology biological process

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
transcription export complex Hs cellular component
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
termination of RNA polymerase II transcription Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
regulation of translation Hs biological process
nuclear speck Hs cellular component
poly(A)+ mRNA export from nucleus Hs biological process
mRNA 3'-end processing Hs biological process
exon-exon junction complex Hs cellular component
cytoplasmic ribonucleoprotein granule Hs cellular component
positive regulation of translation Hs biological process
mRNA transport Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
transcription export complex Hs cellular component 116 9.04e-30
nucleic acid binding Hs molecular function 116 9.04e-30
RNA binding Hs molecular function 116 9.04e-30
protein binding Hs molecular function 116 9.04e-30
intracellular Hs cellular component 116 9.04e-30
nucleus Hs cellular component 116 9.04e-30
nucleoplasm Hs cellular component 116 9.04e-30
cytoplasm Hs cellular component 116 9.04e-30
cytosol Hs cellular component 116 9.04e-30
nuclear speck Hs cellular component 116 9.04e-30
exon-exon junction complex Hs cellular component 116 9.04e-30
cytoplasmic ribonucleoprotein granule Hs cellular component 116 9.04e-30
extracellular exosome Hs cellular component 40.0 0.001

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.15E-15
RNA binding PANTHER molecular function 4.6E-51
mRNA export from nucleus PANTHER biological process 4.6E-51