Aniseed - Gene card

Gene Card

Best human hits

RAI1; TCF20

Species

P.mammillata

Unique Gene ID

Phmamm.g00013262

Gene Model ID

Phmamm.CG.MTP2014.S1013.g13262

Location

S1013:40299..42280

Transcript Models and Sequences

Phmamm.CG.MTP2014.S1013.g13262.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

26 results

AHC0AAA39YC07

Plate: Plate_39_C07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
EPHD	ProSiteProfiles	Extended PHD (ePHD) domain

GOSlim

12 results

GO Term	Annotation Origin	Type
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcription coactivator activity	Blast	molecular function
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Blast	cellular component
nuclear body	Blast	cellular component
transcription regulatory region DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	57.0	1.51e-08
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	60.5	1.31e-09
transcription coactivator activity	Hs	molecular function	57.0	1.51e-08
RNA binding	Hs	molecular function	57.0	1.51e-08
protein binding	Hs	molecular function	60.5	1.31e-09
nucleus	Hs	cellular component	60.5	1.31e-09
nucleoplasm	Hs	cellular component	60.5	1.31e-09
cytoplasm	Hs	cellular component	60.5	1.31e-09
mitochondrion	Hs	cellular component	60.5	1.31e-09
nuclear body	Hs	cellular component	57.0	1.51e-08
enhancer binding	Hs	molecular function	60.5	1.31e-09
transcription regulatory region DNA binding	Hs	molecular function	57.0	1.51e-08
metal ion binding	Hs	molecular function	60.5	1.31e-09

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value