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Gene Card

Best human hits

SCFD1; STXBP1; VPS45

Species

P.mammillata

Unique Gene ID

Phmamm.g00013764

Gene Model ID

Phmamm.CG.MTP2014.S1120.g13764

Location

S1120:47194..49554

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S1120.g13764.01.t
Phmamm.CG.MTP2014.S1120.g13764.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

5 results

AHC0AAA39YJ15

Plate: Plate_39_J15

AHC0AAA138YK21

Plate: Plate_138_K21

AHC0AAA159YH24

Plate: Plate_159_H24

AHC0AAA250YF21

Plate: Plate_250_F21

AHC0AAA39YJ13

Plate: Plate_39_J13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Sec1-like Pfam Sec1-like protein
Sec1-like PIRSF Sec1-like protein
Sec1-like_sf SUPERFAMILY Sec1-like superfamily
Sec-1-like_dom2 Gene3D Sec1-like, domain 2
Sec1-like PANTHER Sec1-like protein

GOSlim

45 results

GO Term Annotation Origin Type
Golgi membrane Orthology cellular component
cell morphogenesis Orthology biological process
response to hypoxia Orthology biological process
RNA binding Blast molecular function
protein binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
mitochondrion Blast cellular component
endosome Blast cellular component
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum membrane Orthology cellular component
Golgi apparatus Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Blast cellular component
plasma membrane Orthology cellular component
protein transport Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
protein kinase binding Blast molecular function
axon Blast cellular component
macromolecular complex Orthology cellular component
identical protein binding Blast molecular function
myelin sheath Blast cellular component
protein N-terminus binding Orthology molecular function
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
postsynapse Blast cellular component
cytoplasmic vesicle Orthology cellular component
Golgi apparatus part Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
intracellular transport Orthology biological process
ubiquitin-like protein transferase activity Orthology molecular function
ligase activity Orthology molecular function
peptidase activity, acting on L-amino acid peptides Orthology molecular function
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
bounding membrane of organelle Blast cellular component
endomembrane system Blast cellular component
cell projection part Blast cellular component
synapse part Blast cellular component
enzyme binding Blast molecular function
synaptic membrane Blast cellular component
neuron part Blast cellular component

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
cell morphogenesis Hs biological process
response to hypoxia Hs biological process
protein binding Hs molecular function
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
endoplasmic reticulum membrane Hs cellular component
Golgi apparatus Hs cellular component
Golgi-associated vesicle Hs cellular component
cis-Golgi network Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
retrograde vesicle-mediated transport, Golgi to ER Hs biological process
post-Golgi vesicle-mediated transport Hs biological process
vesicle docking involved in exocytosis Hs biological process
response to toxic substance Hs biological process
protein transport Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
vesicle-mediated transport Hs biological process
Golgi transport complex Hs cellular component
syntaxin binding Hs molecular function
Golgi cisterna membrane Hs cellular component
protein N-terminus binding Hs molecular function
COPII vesicle coating Hs biological process
regulation of protein transport Hs biological process
regulation of ER to Golgi vesicle-mediated transport Hs biological process
toxin transport Hs biological process
negative regulation of autophagosome assembly Hs biological process

GO (Blast)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 110 2.52e-25
SNARE binding Hs molecular function 73.6 1.61e-13
RNA binding Hs molecular function 73.6 1.61e-13
protein binding Hs molecular function 771 0.0
nucleus Hs cellular component 73.6 1.61e-13
nucleoplasm Hs cellular component 73.6 1.61e-13
cytoplasm Hs cellular component 771 0.0
mitochondrion Hs cellular component 73.6 1.61e-13
endosome Hs cellular component 110 2.52e-25
endoplasmic reticulum Hs cellular component 771 0.0
endoplasmic reticulum membrane Hs cellular component 771 0.0
Golgi apparatus Hs cellular component 771 0.0
Golgi-associated vesicle Hs cellular component 771 0.0
cis-Golgi network Hs cellular component 771 0.0
cytosol Hs cellular component 771 0.0
cytoskeleton Hs cellular component 73.6 1.61e-13
plasma membrane Hs cellular component 771 0.0
endosome membrane Hs cellular component 110 2.52e-25
membrane Hs cellular component 771 0.0
integral component of membrane Hs cellular component 771 0.0
syntaxin-1 binding Hs molecular function 73.6 1.61e-13
Golgi transport complex Hs cellular component 771 0.0
protein kinase binding Hs molecular function 73.6 1.61e-13
protein domain specific binding Hs molecular function 73.6 1.61e-13
syntaxin binding Hs molecular function 771 0.0
axon Hs cellular component 73.6 1.61e-13
platelet alpha granule Hs cellular component 73.6 1.61e-13
Golgi cisterna membrane Hs cellular component 771 0.0
macromolecular complex Hs cellular component 73.6 1.61e-13
identical protein binding Hs molecular function 73.6 1.61e-13
terminal bouton Hs cellular component 73.6 1.61e-13
myelin sheath Hs cellular component 73.6 1.61e-13
phospholipase binding Hs molecular function 73.6 1.61e-13
phagocytic vesicle Hs cellular component 73.6 1.61e-13
protein N-terminus binding Hs molecular function 771 0.0
perinuclear region of cytoplasm Hs cellular component 73.6 1.61e-13
presynaptic active zone membrane Hs cellular component 73.6 1.61e-13
extracellular exosome Hs cellular component 73.6 1.61e-13
presynapse Hs cellular component 73.6 1.61e-13
postsynapse Hs cellular component 73.6 1.61e-13

GO (InterProScan)

2 results

GO Term Analysis Type e-value
vesicle docking involved in exocytosis PANTHER biological process 1.0E-234
vesicle-mediated transport PANTHER biological process 1.0E-234

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