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GENE CARD

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Gene Card

Best human hits

SRSF4; SRSF5; SRSF6

Species

P.mammillata

Unique Gene ID

Phmamm.g00014656

Gene Model ID

Phmamm.CG.MTP2014.S1385.g14656

Location

S1385:3908..5386

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

83 results

AHC0AAA18YK07

Plate: Plate_18_K07

AHC0AAA19YN16

Plate: Plate_19_N16

AHC0AAA2YC18

Plate: Plate_2_C18

AHC0AAA20YJ15

Plate: Plate_20_J15

AHC0AAA25YH24

Plate: Plate_25_H24

AHC0AAA8YM17

Plate: Plate_8_M17

AHC0AAA31YD06

Plate: Plate_31_D06

AHC0AAA32YP01

Plate: Plate_32_P01

AHC0AAA35YF10

Plate: Plate_35_F10

AHC0AAA38YG13

Plate: Plate_38_G13

AHC0AAA38YL22

Plate: Plate_38_L22

AHC0AAA39YD07

Plate: Plate_39_D07

AHC0AAA39YH07

Plate: Plate_39_H07

AHC0AAA41YB12

Plate: Plate_41_B12

AHC0AAA42YN03

Plate: Plate_42_N03

AHC0AAA45YB13

Plate: Plate_45_B13

AHC0AAA60YD08

Plate: Plate_60_D08

AHC0AAA60YD22

Plate: Plate_60_D22

AHC0AAA61YI06

Plate: Plate_61_I06

AHC0AAA66YA14

Plate: Plate_66_A14

AHC0AAA66YO11

Plate: Plate_66_O11

AHC0AAA67YI02

Plate: Plate_67_I02

AHC0AAA67YO15

Plate: Plate_67_O15

AHC0AAA72YH19

Plate: Plate_72_H19

AHC0AAA72YL21

Plate: Plate_72_L21

AHC0AAA75YE09

Plate: Plate_75_E09

AHC0AAA75YL10

Plate: Plate_75_L10

AHC0AAA77YA03

Plate: Plate_77_A03

AHC0AAA101YF06

Plate: Plate_101_F06

AHC0AAA101YN05

Plate: Plate_101_N05

AHC0AAA104YO02

Plate: Plate_104_O02

AHC0AAA108YM11

Plate: Plate_108_M11

AHC0AAA110YF05

Plate: Plate_110_F05

AHC0AAA110YN10

Plate: Plate_110_N10

AHC0AAA115YN19

Plate: Plate_115_N19

AHC0AAA121YG15

Plate: Plate_121_G15

AHC0AAA135YC21

Plate: Plate_135_C21

AHC0AAA137YP02

Plate: Plate_137_P02

AHC0AAA138YO24

Plate: Plate_138_O24

AHC0AAA142YO24

Plate: Plate_142_O24

AHC0AAA143YO02

Plate: Plate_143_O02

AHC0AAA145YC17

Plate: Plate_145_C17

AHC0AAA148YB24

Plate: Plate_148_B24

AHC0AAA152YB11

Plate: Plate_152_B11

AHC0AAA83YM20

Plate: Plate_83_M20

AHC0AAA171YG05

Plate: Plate_171_G05

AHC0AAA172YL05

Plate: Plate_172_L05

AHC0AAA174YJ24

Plate: Plate_174_J24

AHC0AAA178YH08

Plate: Plate_178_H08

AHC0AAA178YI03

Plate: Plate_178_I03

AHC0AAA183YE08

Plate: Plate_183_E08

AHC0AAA184YB24

Plate: Plate_184_B24

AHC0AAA184YI13

Plate: Plate_184_I13

AHC0AAA189YP07

Plate: Plate_189_P07

AHC0AAA193YD17

Plate: Plate_193_D17

AHC0AAA194YH04

Plate: Plate_194_H04

AHC0AAA197YD13

Plate: Plate_197_D13

AHC0AAA200YL04

Plate: Plate_200_L04

AHC0AAA206YC19

Plate: Plate_206_C19

AHC0AAA207YH13

Plate: Plate_207_H13

AHC0AAA207YH24

Plate: Plate_207_H24

AHC0AAA212YP11

Plate: Plate_212_P11

AHC0AAA215YH13

Plate: Plate_215_H13

AHC0AAA217YF24

Plate: Plate_217_F24

AHC0AAA221YI12

Plate: Plate_221_I12

AHC0AAA223YE14

Plate: Plate_223_E14

AHC0AAA223YK08

Plate: Plate_223_K08

AHC0AAA224YC18

Plate: Plate_224_C18

AHC0AAA226YF22

Plate: Plate_226_F22

AHC0AAA241YK10

Plate: Plate_241_K10

AHC0AAA244YB04

Plate: Plate_244_B04

AHC0AAA248YC04

Plate: Plate_248_C04

AHC0AAA248YE16

Plate: Plate_248_E16

AHC0AAA248YO09

Plate: Plate_248_O09

AHC0AAA250YA09

Plate: Plate_250_A09

AHC0AAA251YN11

Plate: Plate_251_N11

AHC0AAA255YF13

Plate: Plate_255_F13

AHC0AAA255YJ06

Plate: Plate_255_J06

AHC0AAA266YH22

Plate: Plate_266_H22

AHC0AAA38YI15

Plate: Plate_38_I15

AHC0AAA38YN24

Plate: Plate_38_N24

AHC0AAA39YD05

Plate: Plate_39_D05

AHC0AAA39YH05

Plate: Plate_39_H05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom Pfam RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain
RRM_dom ProSiteProfiles RNA recognition motif domain
RRM1_SRSF4-like CDD Serine/arginine-rich splicing factor SRSF4-like, RNA recognition motif 1

GOSlim

22 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
animal organ development Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
response to organic substance Orthology biological process
cellular response to organic substance Orthology biological process
positive regulation of gene expression Orthology biological process
protein kinase binding Orthology molecular function
cell cycle Orthology biological process

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
mRNA splicing, via spliceosome Hs biological process
liver development Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytosol Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA splice site selection Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
mRNA 3'-end processing Hs biological process
response to insulin Hs biological process
cellular response to insulin stimulus Hs biological process
positive regulation of RNA splicing Hs biological process
protein kinase B binding Hs molecular function
regulation of cell cycle Hs biological process

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 208 7.96e-64
RNA binding Hs molecular function 208 7.96e-64
protein binding Hs molecular function 208 7.96e-64
nucleus Hs cellular component 208 7.96e-64
nucleoplasm Hs cellular component 208 7.96e-64
nucleolus Hs cellular component 181 5.56e-56
cytosol Hs cellular component 181 5.56e-56
nuclear speck Hs cellular component 208 7.96e-64
pre-mRNA binding Hs molecular function 182 1.28e-55
protein kinase B binding Hs molecular function 181 5.56e-56
sequence-specific mRNA binding Hs molecular function 208 7.96e-64

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 7.47E-33