Aniseed - Gene card

Gene 'Boleac.CG.SB_v3.S58....' >

Gene Card

Best human hits

H2AFV; H2AFZ; MAEL

Species

P.mammillata

Unique Gene ID

Phmamm.g00015373

Gene Model ID

Phmamm.CG.MTP2014.S1663.g15373

Location

S1663:5453..10168

Transcript Models and Sequences

Phmamm.CG.MTP2014.S1663.g15373.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

186 results

AHC0AAA55YG20

Plate: Plate_55_G20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term	Analysis	Definition
Histone_H2A	PRINTS	Histone H2A
HMG_box_dom_sf	Gene3D	High mobility group box domain superfamily
Histone_H2A/H2B/H3	Pfam	Histone H2A/H2B/H3
HMG_box_dom	ProSiteProfiles	High mobility group box domain
Histone_H2A	SMART	Histone H2A
Maelstrom	Pfam	Maelstrom domain
HMG_box_dom	Pfam	High mobility group box domain
Histone_H2A_CS	ProSitePatterns	Histone H2A conserved site
Histone_H2A	CDD	Histone H2A
HMG_box_dom	SMART	High mobility group box domain
Histone_H2A_C	Pfam	Histone H2A, C-terminal domain
Histone-fold	SUPERFAMILY	Histone-fold
HMG_box_dom_sf	SUPERFAMILY	High mobility group box domain superfamily
Histone-fold	Gene3D	Histone-fold

GOSlim

37 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cell morphogenesis	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
protein binding	Blast	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cellular response to DNA damage stimulus	Orthology	biological process
multicellular organism development	Orthology	biological process
spermatogenesis	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cell differentiation	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
protein heterodimerization activity	Blast	molecular function
perinuclear region of cytoplasm	Orthology	cellular component
extracellular exosome	Blast	cellular component
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
reproductive process	Orthology	biological process
male gamete generation	Orthology	biological process
intracellular signal transduction	Orthology	biological process
apoptotic process	Orthology	biological process
sexual reproduction	Orthology	biological process
cellular process	Orthology	biological process
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA metabolic process	Orthology	biological process
DNA metabolic process	Orthology	biological process
gamete generation	Orthology	biological process
developmental process	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
chromatin binding	Blast	molecular function
macromolecular complex binding	Blast	molecular function

GO (Orthology)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
chromatin	Hs	cellular component
cell morphogenesis	Hs	biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
XY body	Hs	cellular component
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cellular response to DNA damage stimulus	Hs	biological process
synapsis	Hs	biological process
male meiotic nuclear division	Hs	biological process
multicellular organism development	Hs	biological process
spermatogenesis	Hs	biological process
intrinsic apoptotic signaling pathway in response to DNA damage	Hs	biological process
fertilization	Hs	biological process
negative regulation of gene expression	Hs	biological process
cell differentiation	Hs	biological process
autosome	Hs	cellular component
gene silencing by RNA	Hs	biological process
chromatoid body	Hs	cellular component
piRNA metabolic process	Hs	biological process
DNA methylation involved in gamete generation	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
P granule	Hs	cellular component
sequence-specific DNA binding	Hs	molecular function
negative regulation of transcription, DNA-templated	Hs	biological process
regulation of organ growth	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
meiotic cell cycle	Hs	biological process
regulation of gene silencing by miRNA	Hs	biological process
piP-body	Hs	cellular component

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin	Hs	cellular component	175	4.94e-48
nucleosome	Hs	cellular component	241	2.71e-76
nuclear chromatin	Hs	cellular component	241	2.71e-76
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	241	3.10e-76
RNA polymerase II core promoter sequence-specific DNA binding	Hs	molecular function	241	3.10e-76
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	241	3.10e-76
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	175	4.94e-48
XY body	Hs	cellular component	175	4.94e-48
DNA binding	Hs	molecular function	241	2.71e-76
protein binding	Hs	molecular function	241	3.10e-76
nucleus	Hs	cellular component	241	2.71e-76
chromosome	Hs	cellular component	241	2.71e-76
nuclear euchromatin	Hs	cellular component	241	3.10e-76
nuclear heterochromatin	Hs	cellular component	241	3.10e-76
cytoplasm	Hs	cellular component	175	4.94e-48
autosome	Hs	cellular component	175	4.94e-48
chromatin DNA binding	Hs	molecular function	241	3.10e-76
nucleosomal DNA binding	Hs	molecular function	241	3.10e-76
chromatoid body	Hs	cellular component	175	4.94e-48
P granule	Hs	cellular component	175	4.94e-48
sequence-specific DNA binding	Hs	molecular function	175	4.94e-48
protein heterodimerization activity	Hs	molecular function	241	2.71e-76
perinuclear region of cytoplasm	Hs	cellular component	175	4.94e-48
extracellular exosome	Hs	cellular component	241	2.71e-76
piP-body	Hs	cellular component	175	4.94e-48

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleosome	SMART	cellular component	6.0E-73
DNA binding	SMART	molecular function	6.0E-73
nucleus	SMART	cellular component	6.0E-73
protein heterodimerization activity	Gene3D	molecular function	2.0E-53
regulation of gene silencing by miRNA	Pfam	biological process	4.8E-33