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GENE CARD

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Gene Card

Best human hits

CLEC4C; MRC1; VCAN

Species

P.mammillata

Unique Gene ID

Phmamm.g00016719

Gene Model ID

Phmamm.CG.MTP2014.S2476.g16719

Location

S2476:4567..12118

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S2476.g16719.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

17 results

IPR Term Analysis Definition
C-type_lectin-like SMART C-type lectin-like
EGF-like_CS ProSitePatterns EGF-like, conserved site
C-type_lectin-like Pfam C-type lectin-like
LCCL ProSiteProfiles LCCL domain
Cochlin PANTHER Cochlin
EGF-type_Asp/Asn_hydroxyl_site ProSitePatterns EGF-type aspartate/asparagine hydroxylation site
LCCL Pfam LCCL domain
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
LCCL_sf SUPERFAMILY LCCL domain superfamily
C-type_lectin-like ProSiteProfiles C-type lectin-like
EGF-like_dom SMART EGF-like domain
LCCL SMART LCCL domain
C-type_lectin-like/link_sf Gene3D C-type lectin-like/link domain superfamily
EGF-like_dom ProSiteProfiles EGF-like domain
CTDL_fold SUPERFAMILY C-type lectin fold
EGF-like_dom Pfam EGF-like domain
LCCL_sf Gene3D LCCL domain superfamily

GOSlim

32 results

GO Term Annotation Origin Type
transmembrane signaling receptor activity Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endosome Blast cellular component
endoplasmic reticulum lumen Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
innate immune response InterProScan biological process
metal ion binding Blast molecular function
sensory perception of sound InterProScan biological process
binding Blast molecular function
extracellular region part Blast cellular component
structural molecule activity Blast molecular function
small molecule binding Blast molecular function
carbohydrate derivative binding Blast molecular function
anion binding Blast molecular function
Golgi apparatus part Blast cellular component
intracellular organelle lumen Blast cellular component
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
bounding membrane of organelle Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
lysosome Blast cellular component
vacuolar part Blast cellular component
response to bacterium InterProScan biological process
defense response InterProScan biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
virus receptor activity Hs molecular function 60.8 1.42e-09
receptor activity Hs molecular function 60.8 1.42e-09
transmembrane signaling receptor activity Hs molecular function 60.8 1.42e-09
extracellular matrix structural constituent Hs molecular function 61.2 1.28e-09
calcium ion binding Hs molecular function 61.2 1.28e-09
protein binding Hs molecular function 61.2 1.28e-09
mannose binding Hs molecular function 60.8 1.42e-09
glycosaminoglycan binding Hs molecular function 61.2 1.28e-09
hyaluronic acid binding Hs molecular function 61.2 1.28e-09
extracellular region Hs cellular component 61.2 1.28e-09
proteinaceous extracellular matrix Hs cellular component 61.2 1.28e-09
extracellular space Hs cellular component 61.2 1.28e-09
endosome Hs cellular component 60.8 1.42e-09
endoplasmic reticulum lumen Hs cellular component 61.2 1.28e-09
Golgi lumen Hs cellular component 61.2 1.28e-09
plasma membrane Hs cellular component 60.8 1.42e-09
integral component of plasma membrane Hs cellular component 60.8 1.42e-09
cell surface Hs cellular component 60.8 1.42e-09
endosome membrane Hs cellular component 60.8 1.42e-09
membrane Hs cellular component 61.2 1.28e-09
integral component of membrane Hs cellular component 60.8 1.42e-09
carbohydrate binding Hs molecular function 61.2 1.28e-09
secretory granule membrane Hs cellular component 57.4 2.40e-09
extracellular matrix Hs cellular component 61.2 1.28e-09
lysosomal lumen Hs cellular component 61.2 1.28e-09
metal ion binding Hs molecular function 57.4 2.40e-09
tertiary granule membrane Hs cellular component 57.4 2.40e-09
ficolin-1-rich granule membrane Hs cellular component 57.4 2.40e-09

GO (InterProScan)

5 results

GO Term Analysis Type e-value
calcium ion binding SMART molecular function 0.013
extracellular matrix PANTHER cellular component 5.1E-35
sensory perception of sound PANTHER biological process 5.1E-35
defense response to bacterium PANTHER biological process 5.1E-35
positive regulation of innate immune response PANTHER biological process 5.1E-35

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