Aniseed - Gene card

Gene Card

Best human hits

LRRC71; NLRP13; NOD2

Species

P.mammillata

Unique Gene ID

Phmamm.g00019180

Gene Model ID

Phmamm.CG.MTP2014.S7216.g19180

Location

S7216:250..2195

Transcript Models and Sequences

Phmamm.CG.MTP2014.S7216.g19180.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
LRR_dom_sf	Gene3D	Leucine-rich repeat domain superfamily
Leu-rich_rpt	Pfam	Leucine-rich repeat

GOSlim

19 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
actin binding	Blast	molecular function
protein binding	Blast	molecular function
ATP binding	Blast	molecular function
cytoplasm	Blast	cellular component
mitochondrion	Blast	cellular component
Golgi apparatus	Blast	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
plasma membrane	Blast	cellular component
cell surface	Blast	cellular component
membrane	Blast	cellular component
basolateral plasma membrane	Blast	cellular component
enzyme binding	Blast	molecular function
protein kinase binding	Blast	molecular function
vesicle	Blast	cellular component
macromolecular complex	Blast	cellular component
nuclear part	Blast	cellular component
carbohydrate derivative binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	51.6	1.57e-07
actin binding	Hs	molecular function	51.6	1.57e-07
protein binding	Hs	molecular function	51.6	1.57e-07
ATP binding	Hs	molecular function	51.6	1.57e-07
cytoplasm	Hs	cellular component	51.6	1.57e-07
mitochondrion	Hs	cellular component	51.6	1.57e-07
Golgi apparatus	Hs	cellular component	51.6	1.57e-07
cytosol	Hs	cellular component	51.6	1.57e-07
cytoskeleton	Hs	cellular component	51.6	1.57e-07
plasma membrane	Hs	cellular component	51.6	1.57e-07
COP9 signalosome	Hs	cellular component	51.6	1.57e-07
cell surface	Hs	cellular component	51.6	1.57e-07
membrane	Hs	cellular component	51.6	1.57e-07
basolateral plasma membrane	Hs	cellular component	51.6	1.57e-07
enzyme binding	Hs	molecular function	51.6	1.57e-07
protein kinase binding	Hs	molecular function	51.6	1.57e-07
Hsp70 protein binding	Hs	molecular function	51.6	1.57e-07
vesicle	Hs	cellular component	51.6	1.57e-07
muramyl dipeptide binding	Hs	molecular function	51.6	1.57e-07
macromolecular complex	Hs	cellular component	51.6	1.57e-07
peptidoglycan binding	Hs	molecular function	51.6	1.57e-07
CARD domain binding	Hs	molecular function	51.6	1.57e-07
Hsp90 protein binding	Hs	molecular function	51.6	1.57e-07

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	Pfam	molecular function	0.046