Aniseed - Gene card

Gene Card

Best human hits

CDH13; CDH2; CDH4

Species

B.schlosseri

Unique Gene ID

Boschl.g00035856

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g35856

Location

chrUn:234564142..234567838

Transcript Models and Sequences

Boschl.CG.Botznik2013.chrUn.g35856.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Cadherin-like	SUPERFAMILY	Cadherin-like
Cadherin	PRINTS	Cadherin
Cadherin	Pfam	Cadherin
Cadherin_CS	ProSitePatterns	Cadherin conserved site
Cadherin	SMART	Cadherin

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

128 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mitotic cell cycle	Hs	biological process
positive regulation of endothelial cell proliferation	Hs	biological process
positive regulation of cell-matrix adhesion	Hs	biological process
sprouting angiogenesis	Hs	biological process
calcium ion binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
extracellular space	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
plasma membrane	Hs	cellular component
integral component of plasma membrane	Hs	cellular component
caveola	Hs	cellular component
cell-cell junction	Hs	cellular component
adherens junction	Hs	cellular component
cell-cell adherens junction	Hs	cellular component
fascia adherens	Hs	cellular component
focal adhesion	Hs	cellular component
cell adhesion	Hs	biological process
homophilic cell adhesion via plasma membrane adhesion molecules	Hs	biological process
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Hs	biological process
negative regulation of cell adhesion	Hs	biological process
Rho protein signal transduction	Hs	biological process
axon guidance	Hs	biological process
beta-catenin binding	Hs	molecular function
negative regulation of cell proliferation	Hs	biological process
external side of plasma membrane	Hs	cellular component
regulation of signal transduction	Hs	biological process
cell surface	Hs	cellular component
glial cell differentiation	Hs	biological process
response to organic substance	Hs	biological process
postsynaptic density	Hs	cellular component
intercalated disc	Hs	cellular component
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
basolateral plasma membrane	Hs	cellular component
apical plasma membrane	Hs	cellular component
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Hs	biological process
catenin complex	Hs	cellular component
cell migration	Hs	biological process
Rac protein signal transduction	Hs	biological process
enzyme binding	Hs	molecular function
protein kinase binding	Hs	molecular function
protein phosphatase binding	Hs	molecular function
telencephalon development	Hs	biological process
cerebral cortex development	Hs	biological process
lamellipodium	Hs	cellular component
lamellipodium assembly	Hs	biological process
cell junction	Hs	cellular component
regulation of endocytosis	Hs	biological process
low-density lipoprotein particle binding	Hs	molecular function
positive regulation of cell migration	Hs	biological process
cortical actin cytoskeleton	Hs	cellular component
extracellular matrix	Hs	cellular component
anchored component of membrane	Hs	cellular component
adherens junction organization	Hs	biological process
regulation of epidermal growth factor receptor signaling pathway	Hs	biological process
sarcolemma	Hs	cellular component
identical protein binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
neuron projection	Hs	cellular component
positive regulation of MAPK cascade	Hs	biological process
endothelial cell migration	Hs	biological process
post-translational protein modification	Hs	biological process
cell-cell adhesion mediated by cadherin	Hs	biological process
plasma membrane raft	Hs	cellular component
synapse	Hs	cellular component
alpha-catenin binding	Hs	molecular function
gamma-catenin binding	Hs	molecular function
cadherin binding	Hs	molecular function
positive regulation of axon extension	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
perinuclear region of cytoplasm	Hs	cellular component
blood vessel morphogenesis	Hs	biological process
brain morphogenesis	Hs	biological process
positive regulation of calcium-mediated signaling	Hs	biological process
positive regulation of positive chemotaxis	Hs	biological process
striated muscle cell differentiation	Hs	biological process
localization within membrane	Hs	biological process
adiponectin binding	Hs	molecular function
extracellular exosome	Hs	cellular component
regulation of oligodendrocyte progenitor proliferation	Hs	biological process
lipoprotein particle binding	Hs	molecular function
protein localization to plasma membrane	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process
neuroligin clustering involved in postsynaptic membrane assembly	Hs	biological process
neuronal stem cell population maintenance	Hs	biological process
positive regulation of synaptic vesicle clustering	Hs	biological process
cornified envelope	Hs	cellular component
retina homeostasis	Hs	biological process
endosome	Hs	cellular component
Golgi apparatus	Hs	cellular component
trans-Golgi network	Hs	cellular component
cytosol	Hs	cellular component
gap junction	Hs	cellular component
synapse assembly	Hs	biological process
visual perception	Hs	biological process
cellular response to starvation	Hs	biological process
response to toxic substance	Hs	biological process
cytoplasmic side of plasma membrane	Hs	cellular component
positive regulation of gene expression	Hs	biological process
actin cytoskeleton	Hs	cellular component
lateral plasma membrane	Hs	cellular component
flotillin complex	Hs	cellular component
pituitary gland development	Hs	biological process
negative regulation of cell-cell adhesion	Hs	biological process
desmosome	Hs	cellular component
extracellular matrix organization	Hs	biological process
ankyrin binding	Hs	molecular function
neuron projection development	Hs	biological process
cytoplasmic vesicle	Hs	cellular component
neuromuscular junction	Hs	cellular component
GTPase activating protein binding	Hs	molecular function
wound healing	Hs	biological process
response to drug	Hs	biological process
positive regulation of transcription factor import into nucleus	Hs	biological process
apical junction complex	Hs	cellular component
positive regulation of insulin-like growth factor receptor signaling pathway	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
cell adhesion molecule binding	Hs	molecular function
response to stimulus	Hs	biological process
canonical Wnt signaling pathway	Hs	biological process
cornification	Hs	biological process
cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication	Hs	molecular function
regulation of heart rate by cardiac conduction	Hs	biological process
cell-cell adhesion	Hs	biological process
ficolin-1-rich granule membrane	Hs	cellular component

GO (Blast)

47 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
calcium ion binding	Hs	molecular function	176	1.06e-46
protein binding	Hs	molecular function	161	1.12e-41
extracellular region	Hs	cellular component	176	1.06e-46
extracellular space	Hs	cellular component	176	1.06e-46
cytoplasm	Hs	cellular component	176	1.06e-46
endoplasmic reticulum lumen	Hs	cellular component	161	1.12e-41
plasma membrane	Hs	cellular component	176	1.06e-46
integral component of plasma membrane	Hs	cellular component	168	8.34e-44
caveola	Hs	cellular component	176	1.06e-46
cell-cell junction	Hs	cellular component	161	1.12e-41
adherens junction	Hs	cellular component	161	1.12e-41
cell-cell adherens junction	Hs	cellular component	161	1.12e-41
fascia adherens	Hs	cellular component	161	1.12e-41
focal adhesion	Hs	cellular component	176	1.06e-46
beta-catenin binding	Hs	molecular function	161	1.12e-41
external side of plasma membrane	Hs	cellular component	176	1.06e-46
cell surface	Hs	cellular component	161	1.12e-41
postsynaptic density	Hs	cellular component	161	1.12e-41
intercalated disc	Hs	cellular component	161	1.12e-41
membrane	Hs	cellular component	176	1.06e-46
integral component of membrane	Hs	cellular component	168	8.34e-44
basolateral plasma membrane	Hs	cellular component	161	1.12e-41
apical plasma membrane	Hs	cellular component	161	1.12e-41
catenin complex	Hs	cellular component	161	1.12e-41
enzyme binding	Hs	molecular function	161	1.12e-41
protein kinase binding	Hs	molecular function	161	1.12e-41
protein phosphatase binding	Hs	molecular function	161	1.12e-41
lamellipodium	Hs	cellular component	161	1.12e-41
cell junction	Hs	cellular component	161	1.12e-41
low-density lipoprotein particle binding	Hs	molecular function	176	1.06e-46
cortical actin cytoskeleton	Hs	cellular component	161	1.12e-41
extracellular matrix	Hs	cellular component	176	1.06e-46
anchored component of membrane	Hs	cellular component	176	1.06e-46
sarcolemma	Hs	cellular component	161	1.12e-41
identical protein binding	Hs	molecular function	161	1.12e-41
protein homodimerization activity	Hs	molecular function	176	1.06e-46
neuron projection	Hs	cellular component	176	1.06e-46
plasma membrane raft	Hs	cellular component	161	1.12e-41
synapse	Hs	cellular component	161	1.12e-41
alpha-catenin binding	Hs	molecular function	161	1.12e-41
gamma-catenin binding	Hs	molecular function	161	1.12e-41
cadherin binding	Hs	molecular function	176	1.06e-46
metal ion binding	Hs	molecular function	176	1.06e-46
perinuclear region of cytoplasm	Hs	cellular component	176	1.06e-46
adiponectin binding	Hs	molecular function	176	1.06e-46
extracellular exosome	Hs	cellular component	176	1.06e-46
lipoprotein particle binding	Hs	molecular function	176	1.06e-46

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
calcium ion binding	SMART	molecular function	2.9E-20
plasma membrane	ProSitePatterns	cellular component
cell adhesion	ProSitePatterns	biological process
homophilic cell adhesion via plasma membrane adhesion molecules	SMART	biological process	2.9E-20
membrane	SMART	cellular component	2.9E-20