Aniseed - Gene card

Gene 'KH2012:KH.C3.82' >

Gene Card

Best human hits

TBR1; TBX19; TBXT

Species

C.savignyi

Unique Gene ID

Cisavi.g00007136

Gene Model ID

Cisavi.CG.ENS81.R388.258080-264338

Location

R388:258079..264338

Transcript Models and Sequences

Cisavi.CG.ENS81.R388.258080-264338.03855.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
TF_T-box	PRINTS	Transcription factor, T-box
TF_T-box_CS	ProSitePatterns	Transcription factor, T-box, conserved site
TF_T-box	CDD	Transcription factor, T-box
TF_Brachyury	PRINTS	Transcription factor, Brachyury
TF_T-box	Pfam	Transcription factor, T-box
TF_T-box	SMART	Transcription factor, T-box
TF_T-box	ProSiteProfiles	Transcription factor, T-box
T-box_sf	Gene3D	T-box superfamily
TF_T-box	PANTHER	Transcription factor, T-box
p53-like_TF_DNA-bd	SUPERFAMILY	p53-like transcription factor, DNA-binding

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin	Hs	cellular component	302	3.78e-98
nuclear chromatin	Hs	cellular component	302	3.78e-98
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	302	3.78e-98
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	302	3.78e-98
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	302	3.78e-98
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	280	1.96e-89
RNA polymerase II transcription factor binding	Hs	molecular function	302	3.78e-98
RNA polymerase II activating transcription factor binding	Hs	molecular function	302	3.78e-98
enhancer sequence-specific DNA binding	Hs	molecular function	280	1.96e-89
transcriptional repressor activity, RNA polymerase II transcription factor binding	Hs	molecular function	302	3.78e-98
DNA binding	Hs	molecular function	302	3.78e-98
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	302	3.78e-98
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	302	3.78e-98
nucleus	Hs	cellular component	302	3.78e-98
cytoplasm	Hs	cellular component	302	3.78e-98
protein kinase binding	Hs	molecular function	199	1.40e-56
sequence-specific DNA binding	Hs	molecular function	302	3.78e-98

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	PANTHER	molecular function	1.1E-137
nucleus	PANTHER	cellular component	1.1E-137
regulation of transcription, DNA-templated	PANTHER	biological process	1.1E-137