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Gene Card

Best human hits

SCN10A; SCN2A; SCN9A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000181

Gene Model ID

KH2012:KH.C1.1161

Location

KhC1:8595895..8627151

Transcript Models and Sequences

  KH2012:KH.C1.1161.v1.A.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005490
NCBI Reference Sequence XM_018812474.1
Collections

Gene collection 1 (N. Satoh)

2 results

cilv051m12

Plate: R1CiGC44g08

cicl105n17

Plate: R1CiGC39j22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Na_channel_asu PRINTS Voltage gated sodium channel, alpha subunit
Volt_channel_dom_sf Gene3D Voltage-dependent channel domain superfamily
Ion_trans_dom Pfam Ion transport domain

GOSlim

20 results

GO Term Annotation Origin Type
protein binding Blast molecular function
intracellular Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
ion transport Blast biological process
sodium ion transport Blast biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
axon Blast cellular component
intrinsic component of plasma membrane Blast cellular component
cell projection Blast cellular component
transmembrane transport Blast biological process
extracellular exosome Blast cellular component
macromolecular complex Blast cellular component
cell junction Blast cellular component
plasma membrane part Blast cellular component
metal ion binding Blast molecular function
cell projection part Blast cellular component
cytoplasmic part Blast cellular component
membrane part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
voltage-gated sodium channel complex Hs cellular component 1004 0.0
ion channel activity Hs molecular function 1004 0.0
voltage-gated ion channel activity Hs molecular function 1004 0.0
voltage-gated sodium channel activity Hs molecular function 1004 0.0
sodium channel activity Hs molecular function 1004 0.0
protein binding Hs molecular function 1004 0.0
intracellular Hs cellular component 1004 0.0
plasma membrane Hs cellular component 1004 0.0
integral component of plasma membrane Hs cellular component 1004 0.0
intercalated disc Hs cellular component 1004 0.0
membrane Hs cellular component 1004 0.0
integral component of membrane Hs cellular component 1004 0.0
T-tubule Hs cellular component 1004 0.0
axon Hs cellular component 1004 0.0
intrinsic component of plasma membrane Hs cellular component 1004 0.0
sodium ion binding Hs molecular function 767 0.0
node of Ranvier Hs cellular component 1004 0.0
paranode region of axon Hs cellular component 1004 0.0
sodium channel complex Hs cellular component 1004 0.0
cell projection Hs cellular component 767 0.0
ion channel binding Hs molecular function 974 0.0
extracellular exosome Hs cellular component 974 0.0
clathrin complex Hs cellular component 974 0.0

GO (InterProScan)

6 results

GO Term Analysis Type e-value
voltage-gated sodium channel complex PRINTS cellular component 4.2E-11
ion channel activity Pfam molecular function 2.2E-63
voltage-gated sodium channel activity PRINTS molecular function 4.2E-11
ion transport Pfam biological process 2.2E-63
membrane Pfam cellular component 2.2E-63
transmembrane transport Pfam biological process 2.2E-63

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