Aniseed - Gene card

Gene Card

Best human hits

SEC62

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000578

Gene Model ID

KH2012:KH.C1.347

Location

KhC1:7475166..7490202

Transcript Models and Sequences

KH2012:KH.C1.347.v1.A.SL2-1
KH2012:KH.C1.347.v1.A.SL4-1
KH2012:KH.C1.347.v2.A.SL1-1
KH2012:KH.C1.347.v2.A.SL3-1
KH2012:KH.C1.347.v3.A.ND5-1

External Database Gene Card

External database links

4 results

Database	Gene ID
NCBI Reference Sequence	XM_002125177.4
NCBI Reference Sequence	XM_009864154.1
NCBI Reference Sequence	XM_009864155.2
NCBI Reference Sequence	XM_009864156.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

ciht028o23

Plate: R1CiGC43j18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Sec62	Pfam	Translocation protein Sec62
Sec62	PANTHER	Translocation protein Sec62
WH-like_DNA-bd_sf	Gene3D	Winged helix-like DNA-binding domain superfamily

GOSlim

7 results

GO Term	Annotation Origin	Type
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cytosol	Orthology	cellular component
cotranslational protein targeting to membrane	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
receptor activity	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
cotranslational protein targeting to membrane	Hs	biological process
protein transport	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
integral component of endoplasmic reticulum membrane	Hs	cellular component

GO (Blast)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
receptor activity	Hs	molecular function	237	4.00e-75
endoplasmic reticulum	Hs	cellular component	237	4.00e-75
endoplasmic reticulum membrane	Hs	cellular component	237	4.00e-75
rough endoplasmic reticulum	Hs	cellular component	237	4.00e-75
cytosol	Hs	cellular component	237	4.00e-75
membrane	Hs	cellular component	237	4.00e-75
integral component of membrane	Hs	cellular component	237	4.00e-75
integral component of endoplasmic reticulum membrane	Hs	cellular component	237	4.00e-75

GO (InterProScan)