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Gene Card

Best human hits

DDX3X; DDX3Y; DDX41

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001794

Gene Model ID

KH2012:KH.C10.563

Location

KhC10:2018984..2021100

Transcript Models and Sequences

  KH2012:KH.C10.563.v1.A.nonSL2-1
KH2012:KH.C10.563.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008215
NCBI Reference Sequence NM_001078513.1
Collections

Gateway full ORF

2 results

cien33671

Plate: VES75_C17

cien72152

Plate: VES81_B16

Gene collection 1 (N. Satoh)

2 results

cicl010h10

Plate: R1CiGC09h19

cieg008l11

Plate: R1CiGC16h22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C SMART Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif

GOSlim

49 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
immune system process Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
GTPase activity Blast molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
extracellular region Blast cellular component
nucleus Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Blast cellular component
endoplasmic reticulum Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
apoptotic process Orthology biological process
transcription factor binding Blast molecular function
cell proliferation Orthology biological process
RNA splicing Orthology biological process
membrane Orthology cellular component
nuclear speck Blast cellular component
hydrolase activity Orthology molecular function
nucleoside-triphosphatase activity Orthology molecular function
cell differentiation Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
extracellular exosome Blast cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
RNA metabolic process Orthology biological process
defense response Orthology biological process
organelle organization Blast biological process
whole membrane Blast cellular component
mitochondrial membrane Blast cellular component
bounding membrane of organelle Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
intracellular organelle part Blast cellular component
ribosome Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
macromolecular complex binding Blast molecular function
enzyme activator activity Blast molecular function
protein kinase binding Blast molecular function
protein serine/threonine kinase activity Blast molecular function
cell adhesion molecule binding Blast molecular function

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
spliceosomal complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
cytosol Hs cellular component
mRNA processing Hs biological process
apoptotic process Hs biological process
cell proliferation Hs biological process
RNA splicing Hs biological process
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
cell differentiation Hs biological process
positive regulation of type I interferon production Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
defense response to virus Hs biological process
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

44 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 792 0.0
nucleic acid binding Hs molecular function 792 0.0
DNA binding Hs molecular function 792 0.0
RNA binding Hs molecular function 792 0.0
GTPase activity Hs molecular function 294 4.02e-90
ATP-dependent DNA helicase activity Hs molecular function 294 4.02e-90
ATP-dependent RNA helicase activity Hs molecular function 792 0.0
helicase activity Hs molecular function 792 0.0
protein binding Hs molecular function 792 0.0
ATP binding Hs molecular function 792 0.0
extracellular region Hs cellular component 294 4.02e-90
nucleus Hs cellular component 792 0.0
spliceosomal complex Hs cellular component 792 0.0
nucleolus Hs cellular component 792 0.0
cytoplasm Hs cellular component 792 0.0
mitochondrion Hs cellular component 294 4.02e-90
mitochondrial outer membrane Hs cellular component 294 4.02e-90
endoplasmic reticulum Hs cellular component 792 0.0
cytosol Hs cellular component 792 0.0
eukaryotic translation initiation factor 3 complex Hs cellular component 294 4.02e-90
transcription factor binding Hs molecular function 294 4.02e-90
poly(A) binding Hs molecular function 294 4.02e-90
eukaryotic initiation factor 4E binding Hs molecular function 294 4.02e-90
cytoplasmic stress granule Hs cellular component 294 4.02e-90
membrane Hs cellular component 792 0.0
nuclear speck Hs cellular component 294 4.02e-90
hydrolase activity Hs molecular function 792 0.0
ATPase activity Hs molecular function 294 4.02e-90
nucleoside-triphosphatase activity Hs molecular function 294 4.02e-90
cytosolic small ribosomal subunit Hs cellular component 294 4.02e-90
translation initiation factor binding Hs molecular function 294 4.02e-90
RNA strand annealing activity Hs molecular function 294 4.02e-90
secretory granule lumen Hs cellular component 294 4.02e-90
RNA stem-loop binding Hs molecular function 294 4.02e-90
cytoplasmic ribonucleoprotein granule Hs cellular component 295 3.86e-91
ribosomal small subunit binding Hs molecular function 294 4.02e-90
CTPase activity Hs molecular function 294 4.02e-90
protein serine/threonine kinase activator activity Hs molecular function 294 4.02e-90
cadherin binding Hs molecular function 294 4.02e-90
metal ion binding Hs molecular function 792 0.0
mRNA 5'-UTR binding Hs molecular function 294 4.02e-90
extracellular exosome Hs cellular component 294 4.02e-90
catalytic step 2 spliceosome Hs cellular component 792 0.0
ficolin-1-rich granule lumen Hs cellular component 294 4.02e-90

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 2.2E-44
ATP binding Pfam molecular function 2.2E-44

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