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GENE CARD

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Gene Card

Best human hits

ENDOD1; ENDOG; EXOG

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006256

Gene Model ID

KH2012:KH.C4.186

Location

KhC4:4775289..4777117

Transcript Models and Sequences

  KH2012:KH.C4.186.v1.A.SL1-1
KH2012:KH.C4.186.v1.A.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002120852.3
Collections

Gateway full ORF

2 results

cima821812

Plate: VES60_K05

cima869215

Plate: VES66_P11

Gene collection 1 (N. Satoh)

1 result

cieg056k01

Plate: R1CiGC24j03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
DNA/RNA_non-sp_Endonuclease SMART DNA/RNA non-specific endonuclease
DNA/RNA_non-sp_Endonuclease Pfam DNA/RNA non-specific endonuclease

GOSlim

15 results

GO Term Annotation Origin Type
nucleic acid binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
mitochondrion Blast cellular component
mitochondrial inner membrane Blast cellular component
cytosol Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Blast molecular function
macromolecular complex Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
DNA metabolic process Blast biological process
neuronal cell body Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 67.8 6.69e-13
nuclease activity Hs molecular function 67.8 6.69e-13
endonuclease activity Hs molecular function 67.8 6.69e-13
deoxyribonuclease activity Hs molecular function 39.7 0.001
protein binding Hs molecular function 39.7 0.001
extracellular region Hs cellular component 67.8 6.69e-13
nucleus Hs cellular component 39.7 0.001
mitochondrion Hs cellular component 39.7 0.001
mitochondrial inner membrane Hs cellular component 39.7 0.001
cytosol Hs cellular component 67.8 6.69e-13
5'-3' exonuclease activity Hs molecular function 39.7 0.001
membrane Hs cellular component 67.8 6.69e-13
integral component of membrane Hs cellular component 39.7 0.001
hydrolase activity Hs molecular function 67.8 6.69e-13
macromolecular complex Hs cellular component 39.7 0.001
perikaryon Hs cellular component 39.7 0.001
metal ion binding Hs molecular function 67.8 6.69e-13
extracellular exosome Hs cellular component 67.8 6.69e-13

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 4.3E-15
hydrolase activity Pfam molecular function 4.3E-15
metal ion binding Pfam molecular function 4.3E-15

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