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Gene Card

Best human hits

SMARCB1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006586

Gene Model ID

KH2012:KH.C4.49

Location

KhC4:485543..489645

Transcript Models and Sequences

  KH2012:KH.C4.49.v1.A.nonSL4-1
KH2012:KH.C4.49.v1.A.nonSL5-1
KH2012:KH.C4.49.v1.A.nonSL6-1
KH2012:KH.C4.49.v1.R.ND3-1
KH2012:KH.C4.49.v2.A.nonSL4-2
KH2012:KH.C4.49.v2.A.nonSL6-2
KH2012:KH.C4.49.v2.R.ND2-2
KH2012:KH.C4.49.v3.A.nonSL4-1
KH2012:KH.C4.49.v3.A.nonSL5-1
KH2012:KH.C4.49.v3.A.nonSL6-1
KH2012:KH.C4.49.v3.R.ND1-1
KH2012:KH.C4.49.v4.A.nonSL4-2
KH2012:KH.C4.49.v4.A.nonSL6-2
KH2012:KH.C4.49.v4.R.ND2-2

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000009008
NCBI Reference Sequence XM_018811493.1
Collections

Gateway full ORF

2 results

cima833555

Plate: VES62_K13

cima877756

Plate: VES68_I05

Gene collection 1 (N. Satoh)

1 result

ciad039i18

Plate: R1CiGC04g20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
SNF5 PANTHER SNF5/SMARCB1/INI1
SNF5 Pfam SNF5/SMARCB1/INI1
Sfh1/SNF5 PIRSF Chromatin-remodeling complex component Sfh1/SNF5

GOSlim

31 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
cell cycle Orthology biological process
nervous system development Orthology biological process
negative regulation of cell proliferation Orthology biological process
cell differentiation Orthology biological process
macromolecular complex Orthology cellular component
intracellular membrane-bounded organelle Orthology cellular component
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
DNA-templated transcription, initiation Orthology biological process
transcription regulatory region sequence-specific DNA binding Orthology molecular function
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transcription factor binding Orthology molecular function
chromatin binding Orthology molecular function
macromolecular complex binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
neuron part Orthology cellular component
positive regulation of transcription, DNA-templated Orthology biological process

GO (Orthology)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear chromosome Hs cellular component
nuclear chromatin Hs cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function
RNA polymerase I transcriptional preinitiation complex assembly Hs biological process
fibrillar center Hs cellular component
XY body Hs cellular component
p53 binding Hs molecular function
DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
DNA repair Hs biological process
chromatin organization Hs biological process
nucleosome disassembly Hs biological process
chromatin remodeling Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
cell cycle Hs biological process
nervous system development Hs biological process
negative regulation of cell proliferation Hs biological process
DNA integration Hs biological process
viral process Hs biological process
SWI/SNF complex Hs cellular component
cell differentiation Hs biological process
Tat protein binding Hs molecular function
nucleosomal DNA binding Hs molecular function
macromolecular complex Hs cellular component
ATP-dependent chromatin remodeling Hs biological process
intracellular membrane-bounded organelle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of sequence-specific DNA binding transcription factor activity Hs biological process
npBAF complex Hs cellular component
nBAF complex Hs cellular component
positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromosome Hs cellular component 564 0.0
nuclear chromatin Hs cellular component 564 0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 564 0.0
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 564 0.0
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function 564 0.0
fibrillar center Hs cellular component 564 0.0
XY body Hs cellular component 564 0.0
p53 binding Hs molecular function 564 0.0
DNA binding Hs molecular function 564 0.0
transcription coactivator activity Hs molecular function 564 0.0
protein binding Hs molecular function 564 0.0
nucleus Hs cellular component 564 0.0
nucleoplasm Hs cellular component 564 0.0
nucleolus Hs cellular component 564 0.0
SWI/SNF complex Hs cellular component 564 0.0
Tat protein binding Hs molecular function 564 0.0
nucleosomal DNA binding Hs molecular function 564 0.0
macromolecular complex Hs cellular component 564 0.0
intracellular membrane-bounded organelle Hs cellular component 564 0.0
npBAF complex Hs cellular component 564 0.0
nBAF complex Hs cellular component 564 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nuclear chromosome PANTHER cellular component 4.6E-114
chromatin remodeling PANTHER biological process 2.7E-50

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