Aniseed - Gene card

Gene Card

Best human hits

CWC22

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006610

Gene Model ID

KH2012:KH.C4.512

Location

KhC4:4239300..4246069

Transcript Models and Sequences

KH2012:KH.C4.512.v1.A.nonSL2-1
KH2012:KH.C4.512.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000008865

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cicl056e17

Plate: R1CiGC14p01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Initiation_fac_eIF4g_MI	Pfam	Initiation factor eIF-4 gamma, MA3
MIF4-like_sf	Gene3D	MIF4G-like domain superfamily
Initiation_fac_eIF4g_MI	SMART	Initiation factor eIF-4 gamma, MA3
Initiation_fac_eIF4g_MI	ProSiteProfiles	Initiation factor eIF-4 gamma, MA3
MIF4G-like_typ-3	SMART	MIF4G-like, type 3
ARM-type_fold	SUPERFAMILY	Armadillo-type fold

GOSlim

13 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
RNA binding	Orthology	molecular function
binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear speck	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
regulation of gene expression	Orthology	biological process

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
RNA binding	Hs	molecular function
binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
cytosol	Hs	cellular component
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
nuclear speck	Hs	cellular component
regulation of mRNA splicing, via spliceosome	Hs	biological process
U2-type catalytic step 1 spliceosome	Hs	cellular component
U2-type catalytic step 2 spliceosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
RNA binding	Hs	molecular function	774
binding	Hs	molecular function	774
protein binding	Hs	molecular function	774
nucleus	Hs	cellular component	774
nucleoplasm	Hs	cellular component	774
spliceosomal complex	Hs	cellular component	774
cytosol	Hs	cellular component	774
nuclear speck	Hs	cellular component	774
U2-type catalytic step 1 spliceosome	Hs	cellular component	774
U2-type catalytic step 2 spliceosome	Hs	cellular component	774
catalytic step 2 spliceosome	Hs	cellular component	774

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
RNA binding	SMART	molecular function	3.5E-38
binding	SUPERFAMILY	molecular function	2.59E-60
protein binding	SMART	molecular function	3.5E-38