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Gene Card

Best human hits

PQBP1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008530

Gene Model ID

KH2012:KH.C7.662

Location

KhC7:1904478..1906854

Transcript Models and Sequences

  KH2012:KH.C7.662.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000002659
Collections

Gateway full ORF

2 results

cima816357

Plate: VES59_C01

cima835680

Plate: VES62_O19

Gene collection 1 (N. Satoh)

1 result

cieg014m04

Plate: R1CiGC17n09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
WW_dom SMART WW domain
WW_dom ProSiteProfiles WW domain
WW_dom_sf SUPERFAMILY WW domain superfamily
WW_dom CDD WW domain

GOSlim

27 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
immune system process Orthology biological process
DNA binding Orthology molecular function
double-stranded DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
neuron projection development Orthology biological process
innate immune response Orthology biological process
defense response Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
macromolecular complex binding Orthology molecular function
regulation of gene expression Orthology biological process
cell morphogenesis involved in neuron differentiation Orthology biological process
neuron projection morphogenesis Orthology biological process
cell projection part Orthology cellular component
neuron projection Orthology cellular component

GO (Orthology)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
activation of innate immune response Hs biological process
positive regulation of defense response to virus by host Hs biological process
immune system process Hs biological process
DNA binding Hs molecular function
double-stranded DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
cytoplasmic stress granule Hs cellular component
nuclear speck Hs cellular component
neuron projection development Hs biological process
positive regulation of type I interferon production Hs biological process
ribonucleoprotein complex binding Hs molecular function
regulation of RNA splicing Hs biological process
innate immune response Hs biological process
regulation of dendrite morphogenesis Hs biological process
defense response to virus Hs biological process
neuronal ribonucleoprotein granule Hs cellular component

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
DNA binding Hs molecular function 96.7 1.88e-24
double-stranded DNA binding Hs molecular function 96.7 1.88e-24
transcription coactivator activity Hs molecular function 96.7 1.88e-24
protein binding Hs molecular function 96.7 1.88e-24
nucleus Hs cellular component 96.7 1.88e-24
nucleoplasm Hs cellular component 96.7 1.88e-24
cytoplasm Hs cellular component 96.7 1.88e-24
cytosol Hs cellular component 96.7 1.88e-24
cytoplasmic stress granule Hs cellular component 96.7 1.88e-24
nuclear speck Hs cellular component 96.7 1.88e-24
ribonucleoprotein complex binding Hs molecular function 96.7 1.88e-24
neuronal ribonucleoprotein granule Hs cellular component 96.7 1.88e-24

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 7.08E-7

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