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GENE CARD

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Gene Card

Best human hits

CHMP2B; CHMP3; RNF103-CHMP3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014044

Gene Model ID

KH2012:KH.S1735.3

Location

KhS1735:4406..6006

Transcript Models and Sequences

  KH2012:KH.S1735.3.v1.A.nonSL3-1
KH2012:KH.S1735.3.v1.A.nonSL4-1
KH2012:KH.S1735.3.v1.A.nonSL5-1
KH2012:KH.S1735.3.v1.A.nonSL6-1
KH2012:KH.S1735.3.v1.A.nonSL7-1
KH2012:KH.S1735.3.v1.R.ND1-1
KH2012:KH.S1735.3.v2.A.ND2-1
KH2012:KH.S1735.3.v3.A.nonSL3-1
KH2012:KH.S1735.3.v3.A.nonSL4-1
KH2012:KH.S1735.3.v3.A.nonSL5-1
KH2012:KH.S1735.3.v3.A.nonSL6-1
KH2012:KH.S1735.3.v3.A.nonSL7-1
KH2012:KH.S1735.3.v3.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000004505
NCBI Reference Sequence XM_002130235.3
Collections

Gateway full ORF

2 results

cien45118

Plate: VES77_M10

cien126587

Plate: VES90_O01

Gene collection 1 (N. Satoh)

1 result

citb5h21

Plate: R1CiGC29k08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term Analysis Definition
Snf7_fam Pfam Snf7 family

GOSlim

28 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
intracellular Orthology cellular component
cytoplasm Orthology cellular component
lysosome Blast cellular component
endosome Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
apoptotic process Orthology biological process
cell cycle Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
cytoplasmic vesicle Orthology cellular component
protein homodimerization activity Orthology molecular function
cell division Orthology biological process
extracellular exosome Orthology cellular component
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
microtubule-based process Orthology biological process
intracellular transport Orthology biological process
cation binding Orthology molecular function
anion binding Orthology molecular function
protein oligomerization Orthology biological process
enzyme binding Orthology molecular function
cell adhesion molecule binding Blast molecular function

GO (Orthology)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ESCRT III complex Hs cellular component
cell separation after cytokinesis Hs biological process
protein binding Hs molecular function
intracellular Hs cellular component
cytoplasm Hs cellular component
endosome Hs cellular component
late endosome Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
apoptotic process Hs biological process
vacuolar transport Hs biological process
cell cycle Hs biological process
regulation of centrosome duplication Hs biological process
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
macroautophagy Hs biological process
phosphatidylcholine binding Hs molecular function
cytoplasmic vesicle Hs cellular component
late endosome membrane Hs cellular component
multivesicular body assembly Hs biological process
protein homodimerization activity Hs molecular function
protein polymerization Hs biological process
protein heterooligomerization Hs biological process
cell division Hs biological process
extracellular exosome Hs cellular component
multivesicular body sorting pathway Hs biological process
autophagosome maturation Hs biological process
ubiquitin-specific protease binding Hs molecular function

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ESCRT III complex Hs cellular component 207 9.41e-68
protein binding Hs molecular function 207 9.41e-68
intracellular Hs cellular component 207 9.41e-68
cytoplasm Hs cellular component 207 9.41e-68
lysosome Hs cellular component 77.4 1.58e-17
endosome Hs cellular component 207 9.41e-68
late endosome Hs cellular component 207 9.41e-68
cytosol Hs cellular component 207 9.41e-68
plasma membrane Hs cellular component 207 9.41e-68
membrane Hs cellular component 207 9.41e-68
protein domain specific binding Hs molecular function 77.4 1.58e-17
phosphatidylcholine binding Hs molecular function 207 9.41e-68
cytoplasmic vesicle Hs cellular component 207 9.41e-68
late endosome membrane Hs cellular component 207 9.41e-68
protein homodimerization activity Hs molecular function 207 9.41e-68
cadherin binding Hs molecular function 77.4 1.58e-17
extracellular exosome Hs cellular component 207 9.41e-68
ubiquitin-specific protease binding Hs molecular function 207 9.41e-68

GO (InterProScan)

1 result

GO Term Analysis Type e-value
vacuolar transport Pfam biological process 2.2E-31

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