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Gene Card

Best human hits

LRP1B; LRP4; SORL1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015568

Gene Model ID

NCBI:KH.100180688

Location

KhC9:4217944..4221231

Transcript Models and Sequences

  NCBI:KH.XM_018813288.1

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
LDrepeatLR_classA_rpt PRINTS Low-density lipoprotein (LDL) receptor class A repeat
LDrepeatLR_classA_rpt SMART Low-density lipoprotein (LDL) receptor class A repeat
LDrepeatLR_classA_rpt Pfam Low-density lipoprotein (LDL) receptor class A repeat
LDrepeatLR_classA_rpt ProSiteProfiles Low-density lipoprotein (LDL) receptor class A repeat
LDrepeatLR_classA_rpt CDD Low-density lipoprotein (LDL) receptor class A repeat
LDL_receptor-like_sf SUPERFAMILY LDL receptor-like superfamily
GPCR_Rhodpsn_7TM ProSiteProfiles GPCR, rhodopsin-like, 7TM
TSHR/LHCGR/FSHR PANTHER TSH/LHCG/FSH receptor
GPCR_Rhodpsn Pfam G protein-coupled receptor, rhodopsin-like
LDLR_class-A_CS ProSitePatterns Low-density lipoprotein (LDL) receptor class A, conserved site

GOSlim

43 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
transmembrane signaling receptor activity Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endosome Blast cellular component
early endosome Blast cellular component
endoplasmic reticulum Blast cellular component
Golgi apparatus Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
protein homodimerization activity Blast molecular function
neuronal cell body Blast cellular component
extracellular exosome Blast cellular component
synaptic membrane Blast cellular component
G-protein coupled receptor activity InterProScan molecular function
G-protein coupled receptor signaling pathway InterProScan biological process
binding Blast molecular function
membrane organization Blast biological process
organelle organization Blast biological process
macromolecular complex binding Blast molecular function
nuclear envelope Blast cellular component
intracellular organelle lumen Blast cellular component
Golgi apparatus part Blast cellular component
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
bounding membrane of organelle Blast cellular component
organelle Blast cellular component
postsynapse Blast cellular component
neuron part Blast cellular component
plasma membrane region Blast cellular component
membrane raft Blast cellular component
macromolecular complex Blast cellular component
enzyme binding Blast molecular function
receptor binding Blast molecular function
protein kinase binding Blast molecular function
synapse Blast cellular component
cell surface receptor signaling pathway Blast biological process
cell-cell signaling Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 123 1.51e-28
amyloid-beta binding Hs molecular function 123 1.51e-28
transmembrane signaling receptor activity Hs molecular function 123 1.51e-28
low-density lipoprotein receptor activity Hs molecular function 123 1.51e-28
calcium ion binding Hs molecular function 107 2.12e-23
protein binding Hs molecular function 123 1.51e-28
extracellular region Hs cellular component 123 1.51e-28
extracellular space Hs cellular component 123 1.51e-28
nuclear envelope lumen Hs cellular component 123 1.51e-28
endosome Hs cellular component 123 1.51e-28
early endosome Hs cellular component 123 1.51e-28
endoplasmic reticulum Hs cellular component 123 1.51e-28
Golgi apparatus Hs cellular component 123 1.51e-28
trans-Golgi network Hs cellular component 123 1.51e-28
plasma membrane Hs cellular component 105 4.72e-23
integral component of plasma membrane Hs cellular component 123 1.51e-28
cell surface Hs cellular component 105 4.72e-23
endosome membrane Hs cellular component 123 1.51e-28
postsynaptic density Hs cellular component 105 4.72e-23
membrane Hs cellular component 123 1.51e-28
integral component of membrane Hs cellular component 123 1.51e-28
flotillin complex Hs cellular component 105 4.72e-23
Wnt-protein binding Hs molecular function 105 4.72e-23
low-density lipoprotein particle binding Hs molecular function 123 1.51e-28
ADP-ribosylation factor binding Hs molecular function 123 1.51e-28
dendrite Hs cellular component 105 4.72e-23
receptor tyrosine kinase binding Hs molecular function 105 4.72e-23
neuromuscular junction Hs cellular component 105 4.72e-23
Golgi cisterna Hs cellular component 123 1.51e-28
apolipoprotein binding Hs molecular function 105 4.72e-23
low-density lipoprotein particle Hs cellular component 123 1.51e-28
protein homodimerization activity Hs molecular function 105 4.72e-23
Wnt-activated receptor activity Hs molecular function 105 4.72e-23
neuronal cell body Hs cellular component 105 4.72e-23
receptor complex Hs cellular component 107 2.12e-23
recycling endosome Hs cellular component 123 1.51e-28
extracellular exosome Hs cellular component 123 1.51e-28
synaptic membrane Hs cellular component 105 4.72e-23
scaffold protein binding Hs molecular function 105 4.72e-23

GO (InterProScan)

4 results

GO Term Analysis Type e-value
protein binding PRINTS molecular function 4.4E-23
integral component of membrane Pfam cellular component 1.3E-8
G-protein coupled receptor activity Pfam molecular function 1.3E-8
G-protein coupled receptor signaling pathway Pfam biological process 1.3E-8

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