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GENE CARD

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Gene Card

Best human hits

ZIC2; ZIC3; ZIC4

Species

P.mammillata

Unique Gene ID

Phmamm.g00005538

Gene Model ID

Phmamm.CG.MTP2014.S216.g05538

Location

S216:27000..34403

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S216.g05538.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

5 results

AHC0AAA105YH20

Plate: Plate_105_H20

AHC0AAA134YF09

Plate: Plate_134_F09

AHC0AAA163YB20

Plate: Plate_163_B20

AHC0AAA180YB23

Plate: Plate_180_B23

AHC0AAA235YC10

Plate: Plate_235_C10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Znf_C2H2_type SMART Zinc finger C2H2-type
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type Pfam Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type

GOSlim

36 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
nervous system development Orthology biological process
brain development Orthology biological process
visual perception Orthology biological process
nuclear body Orthology cellular component
cell differentiation Orthology biological process
sequence-specific DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
central nervous system development Orthology biological process
heart development Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
chromatin binding Orthology molecular function
developmental process Orthology biological process
system development Orthology biological process
cell surface receptor signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process
intracellular protein transport Orthology biological process
establishment of protein localization to organelle Orthology biological process

GO (Orthology)

44 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
heart looping Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
determination of left/right symmetry Hs biological process
pattern specification process Hs biological process
nervous system development Hs biological process
brain development Hs biological process
visual perception Hs biological process
anterior/posterior pattern specification Hs biological process
nuclear body Hs cellular component
cell differentiation Hs biological process
lung development Hs biological process
chromatin DNA binding Hs molecular function
somatic stem cell population maintenance Hs biological process
determination of pancreatic left/right asymmetry Hs biological process
determination of left/right asymmetry in nervous system Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
positive regulation of sequence-specific DNA binding transcription factor activity Hs biological process
determination of digestive tract left/right asymmetry Hs biological process
determination of liver left/right asymmetry Hs biological process
central nervous system development Hs biological process
adult walking behavior Hs biological process
regulation of smoothened signaling pathway Hs biological process
spinal cord development Hs biological process
positive regulation of protein import into nucleus Hs biological process
inner ear morphogenesis Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 230 2.00e-68
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 230 2.00e-68
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 229 1.70e-67
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 230 2.00e-68
nucleic acid binding Hs molecular function 230 2.00e-68
DNA binding Hs molecular function 230 2.00e-68
transcription factor activity, sequence-specific DNA binding Hs molecular function 230 2.00e-68
protein binding Hs molecular function 230 2.00e-68
nucleus Hs cellular component 230 2.00e-68
nucleoplasm Hs cellular component 230 2.00e-68
cytoplasm Hs cellular component 230 2.00e-68
nuclear body Hs cellular component 229 1.70e-67
chromatin DNA binding Hs molecular function 229 1.70e-67
sequence-specific DNA binding Hs molecular function 230 2.00e-68
metal ion binding Hs molecular function 230 2.00e-68

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.1E-5

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