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GENE CARD

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Gene Card

Best human hits

KDM2A; KDM2B; PHF8

Species

P.mammillata

Unique Gene ID

Phmamm.g00009401

Gene Model ID

Phmamm.CG.MTP2014.S493.g09401

Location

S493:14854..19057

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

7 results

AHC0AAA68YB06

Plate: Plate_68_B06

AHC0AAA82YO21

Plate: Plate_82_O21

AHC0AAA83YN12

Plate: Plate_83_N12

AHC0AAA190YH04

Plate: Plate_190_H04

AHC0AAA223YF09

Plate: Plate_223_F09

AHC0AAA261YC18

Plate: Plate_261_C18

AHC0AAA264YH05

Plate: Plate_264_H05

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

16 results

IPR Term Analysis Definition
Acyl-CoA-binding_protein Pfam Acyl-CoA-binding protein, ACBP
JmjC_dom ProSiteProfiles JmjC domain
JmjC_dom SMART JmjC domain
Leu-rich_rpt Pfam Leucine-rich repeat
Znf_CXXC ProSiteProfiles Zinc finger, CXXC-type
Acyl-CoA-binding_protein PRINTS Acyl-CoA-binding protein, ACBP
Acyl-CoA-binding_protein ProSiteProfiles Acyl-CoA-binding protein, ACBP
FERM/acyl-CoA-bd_prot_sf Gene3D FERM/acyl-CoA-binding protein superfamily
JmjC_dom Pfam JmjC domain
Acyl-CoA-binding_sf SUPERFAMILY Acyl-CoA binding protein superfamily
Acyl-CoA-binding_protein CDD Acyl-CoA-binding protein, ACBP
Leu-rich_rpt_Cys-con_subtyp SMART Leucine-rich repeat, cysteine-containing subtype
LRR_dom_sf Gene3D Leucine-rich repeat domain superfamily
Acyl-CoA-binding_prot_CS ProSitePatterns Acyl-CoA-binding protein, ACBP, conserved site
Znf_CXXC Pfam Zinc finger, CXXC-type
F-box_dom Pfam F-box domain

GOSlim

23 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
RNA binding Blast molecular function
iron ion binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
zinc ion binding Blast molecular function
nuclear membrane Blast cellular component
metal ion binding Blast molecular function
oxidation-reduction process Blast biological process
transferase activity Blast molecular function
metabolic process Blast biological process
catalytic activity Blast molecular function
nuclear part Blast cellular component
macromolecular complex Blast cellular component
organelle organization Blast biological process
cellular protein modification process Blast biological process
anion binding InterProScan molecular function
adenyl ribonucleotide binding InterProScan molecular function
coenzyme binding InterProScan molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 424 1.22e-129
DNA binding Hs molecular function 458 9.62e-144
chromatin binding Hs molecular function 293 6.10e-84
RNA binding Hs molecular function 424 1.22e-129
iron ion binding Hs molecular function 293 6.10e-84
protein binding Hs molecular function 458 9.62e-144
nucleus Hs cellular component 458 9.62e-144
nucleoplasm Hs cellular component 458 9.62e-144
nucleolus Hs cellular component 424 1.22e-129
methyltransferase activity Hs molecular function 458 9.62e-144
zinc ion binding Hs molecular function 458 9.62e-144
oxidoreductase activity Hs molecular function 458 9.62e-144
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Hs molecular function 293 6.10e-84
rRNA binding Hs molecular function 424 1.22e-129
PcG protein complex Hs cellular component 424 1.22e-129
nuclear membrane Hs cellular component 293 6.10e-84
histone demethylase activity Hs molecular function 458 9.62e-144
histone demethylase activity (H3-K9 specific) Hs molecular function 293 6.10e-84
methylated histone binding Hs molecular function 293 6.10e-84
histone demethylase activity (H4-K20 specific) Hs molecular function 293 6.10e-84
metal ion binding Hs molecular function 458 9.62e-144
dioxygenase activity Hs molecular function 458 9.62e-144
histone demethylase activity (H3-K36 specific) Hs molecular function 458 9.62e-144
histone demethylase activity (H3-K27 specific) Hs molecular function 293 6.10e-84

GO (InterProScan)

4 results

GO Term Analysis Type e-value
DNA binding Pfam molecular function 7.9E-13
protein binding Pfam molecular function 4.6E-6
zinc ion binding Pfam molecular function 7.9E-13
fatty-acyl-CoA binding CDD molecular function 5.8546E-37