Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

TBR1; TBX6; TBXT

Species

P.mammillata

Unique Gene ID

Phmamm.g00010737

Gene Model ID

Phmamm.CG.MTP2014.S631.g10737

Location

S631:16737..20548

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

32 results

AHC0AAA14YG16

Plate: Plate_14_G16

AHC0AAA25YC20

Plate: Plate_25_C20

AHC0AAA3YA15

Plate: Plate_3_A15

AHC0AAA4YG19

Plate: Plate_4_G19

AHC0AAA30YM21

Plate: Plate_30_M21

AHC0AAA33YJ04

Plate: Plate_33_J04

AHC0AAA34YM20

Plate: Plate_34_M20

AHC0AAA42YM13

Plate: Plate_42_M13

AHC0AAA45YN04

Plate: Plate_45_N04

AHC0AAA59YK09

Plate: Plate_59_K09

AHC0AAA68YH12

Plate: Plate_68_H12

AHC0AAA68YK08

Plate: Plate_68_K08

AHC0AAA80YN06

Plate: Plate_80_N06

AHC0AAA100YL09

Plate: Plate_100_L09

AHC0AAA103YC03

Plate: Plate_103_C03

AHC0AAA103YL17

Plate: Plate_103_L17

AHC0AAA106YI24

Plate: Plate_106_I24

AHC0AAA147YH17

Plate: Plate_147_H17

AHC0AAA106YI22

Plate: Plate_106_I22

AHC0AAA147YJ19

Plate: Plate_147_J19

AHC0AAA158YA10

Plate: Plate_158_A10

AHC0AAA167YM01

Plate: Plate_167_M01

AHC0AAA184YL23

Plate: Plate_184_L23

AHC0AAA187YN20

Plate: Plate_187_N20

AHC0AAA193YG19

Plate: Plate_193_G19

AHC0AAA208YC05

Plate: Plate_208_C05

AHC0AAA213YI08

Plate: Plate_213_I08

AHC0AAA233YJ03

Plate: Plate_233_J03

AHC0AAA236YP13

Plate: Plate_236_P13

AHC0AAA240YF02

Plate: Plate_240_F02

AHC0AAA257YJ01

Plate: Plate_257_J01

AHC0AAA258YG22

Plate: Plate_258_G22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
TF_T-box Pfam Transcription factor, T-box
TF_T-box PRINTS Transcription factor, T-box
TF_T-box PANTHER Transcription factor, T-box
T-box_sf Gene3D T-box superfamily
TF_T-box SMART Transcription factor, T-box
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding
TF_T-box ProSiteProfiles Transcription factor, T-box

GOSlim

15 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
protein kinase binding Blast molecular function
sequence-specific DNA binding Blast molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
transcription factor binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
chromatin Hs cellular component 161 4.58e-43
nuclear chromatin Hs cellular component 161 4.58e-43
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 173 1.48e-45
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 167 5.79e-45
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 173 1.48e-45
RNA polymerase II transcription factor binding Hs molecular function 167 5.79e-45
RNA polymerase II activating transcription factor binding Hs molecular function 167 5.79e-45
transcriptional repressor activity, RNA polymerase II transcription factor binding Hs molecular function 167 5.79e-45
DNA binding Hs molecular function 173 1.48e-45
transcription factor activity, sequence-specific DNA binding Hs molecular function 173 1.48e-45
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 161 4.58e-43
protein binding Hs molecular function 167 5.79e-45
nucleus Hs cellular component 173 1.48e-45
cytoplasm Hs cellular component 161 4.58e-43
protein kinase binding Hs molecular function 173 1.48e-45
sequence-specific DNA binding Hs molecular function 161 4.58e-43

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 5.3E-71
nucleus PANTHER cellular component 5.3E-71
regulation of transcription, DNA-templated PANTHER biological process 5.3E-71