Aniseed - Gene card

Gene Card

Best human hits

NLE1; TAF5; WDR55

Species

P.mammillata

Unique Gene ID

Phmamm.g00002892

Gene Model ID

Phmamm.CG.MTP2014.S88.g02892

Location

S88:14480..19724

Transcript Models and Sequences

Phmamm.CG.MTP2014.S88.g02892.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

3 results

AHC0AAA242YG11

Plate: Plate_242_G11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
WD40_repeat	Pfam	WD40 repeat
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain
WD40_repeat	SMART	WD40 repeat

GOSlim

19 results

GO Term	Annotation Origin	Type
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
ribosome	Blast	cellular component
identical protein binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
protein dimerization activity	Blast	molecular function
RNA processing	Orthology	biological process
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component
organelle organization	Blast	biological process
transferase activity	Blast	molecular function
cellular protein modification process	Blast	biological process
nucleoplasm part	Blast	cellular component
macromolecular complex	Blast	cellular component
cytoskeleton	Blast	cellular component

GO (Orthology)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
rRNA processing	Hs	biological process
ribosomal large subunit biogenesis	Hs	biological process

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	39.7	0.003
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	39.7	0.003
histone acetyltransferase activity	Hs	molecular function	39.7	0.003
protein binding	Hs	molecular function	189	1.31e-56
nucleus	Hs	cellular component	189	1.31e-56
nucleoplasm	Hs	cellular component	39.7	0.003
transcription factor TFIID complex	Hs	cellular component	39.7	0.003
nucleolus	Hs	cellular component	189	1.31e-56
cytoplasm	Hs	cellular component	189	1.31e-56
ribosome	Hs	cellular component	40.0	0.002
actin cytoskeleton	Hs	cellular component	39.7	0.003
transcription factor TFTC complex	Hs	cellular component	39.7	0.003
identical protein binding	Hs	molecular function	39.7	0.003
transcription regulatory region DNA binding	Hs	molecular function	39.7	0.003
protein dimerization activity	Hs	molecular function	39.7	0.003

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	3.5E-34