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Gene Card

Best human hits

DDX17; DDX42; DDX5

Species

B.leachii

Unique Gene ID

Boleac.g00002943

Gene Model ID

Boleac.CG.SB_v3.S149.g02943

Location

S149:66294..70719

Transcript Models and Sequences

  Boleac.CG.SB_v3.S149.g02943.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C SMART Helicase, C-terminal
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_C Pfam Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

65 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
nucleotide binding Hs molecular function
alternative mRNA splicing, via spliceosome Hs biological process
regulation of alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
nuclear-transcribed mRNA catabolic process Hs biological process
epithelial to mesenchymal transition Hs biological process
immune system process Hs biological process
nucleic acid binding Hs molecular function
transcription coactivator activity Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
mRNA 3'-UTR binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
calmodulin binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
rRNA processing Hs biological process
RNA processing Hs biological process
mRNA processing Hs biological process
RNA-dependent ATPase activity Hs molecular function
RNA splicing Hs biological process
mRNA transcription Hs biological process
RNA secondary structure unwinding Hs biological process
miRNA metabolic process Hs biological process
membrane Hs cellular component
cell growth Hs biological process
nuclear speck Hs cellular component
hydrolase activity Hs molecular function
enzyme binding Hs molecular function
BMP signaling pathway Hs biological process
intracellular estrogen receptor signaling pathway Hs biological process
androgen receptor signaling pathway Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
MH2 domain binding Hs molecular function
pre-mRNA binding Hs molecular function
ribonucleoprotein complex binding Hs molecular function
myoblast differentiation Hs biological process
regulation of osteoblast differentiation Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
SMAD binding Hs molecular function
calcium-dependent protein binding Hs molecular function
rhythmic process Hs biological process
androgen receptor binding Hs molecular function
defense response to virus Hs biological process
regulation of androgen receptor signaling pathway Hs biological process
extracellular exosome Hs cellular component
R-SMAD binding Hs molecular function
primary miRNA binding Hs molecular function
catalytic step 2 spliceosome Hs cellular component
SMAD protein complex Hs cellular component
intrinsic apoptotic signaling pathway by p53 class mediator Hs biological process
promoter-specific chromatin binding Hs molecular function
regulation of skeletal muscle cell differentiation Hs biological process

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 672 0.0
nucleic acid binding Hs molecular function 672 0.0
transcription coactivator activity Hs molecular function 672 0.0
RNA binding Hs molecular function 672 0.0
RNA helicase activity Hs molecular function 672 0.0
mRNA 3'-UTR binding Hs molecular function 670 0.0
ATP-dependent RNA helicase activity Hs molecular function 672 0.0
helicase activity Hs molecular function 672 0.0
protein binding Hs molecular function 672 0.0
calmodulin binding Hs molecular function 670 0.0
ATP binding Hs molecular function 672 0.0
nucleus Hs cellular component 672 0.0
nucleoplasm Hs cellular component 672 0.0
spliceosomal complex Hs cellular component 670 0.0
nucleolus Hs cellular component 672 0.0
cytoplasm Hs cellular component 672 0.0
cytosol Hs cellular component 672 0.0
RNA-dependent ATPase activity Hs molecular function 672 0.0
Cajal body Hs cellular component 359 3.91e-113
membrane Hs cellular component 672 0.0
nuclear speck Hs cellular component 672 0.0
hydrolase activity Hs molecular function 672 0.0
enzyme binding Hs molecular function 670 0.0
intracellular ribonucleoprotein complex Hs cellular component 670 0.0
MH2 domain binding Hs molecular function 670 0.0
pre-mRNA binding Hs molecular function 670 0.0
ribonucleoprotein complex binding Hs molecular function 670 0.0
SMAD binding Hs molecular function 670 0.0
calcium-dependent protein binding Hs molecular function 670 0.0
androgen receptor binding Hs molecular function 670 0.0
extracellular exosome Hs cellular component 670 0.0
R-SMAD binding Hs molecular function 670 0.0
primary miRNA binding Hs molecular function 670 0.0
catalytic step 2 spliceosome Hs cellular component 670 0.0
SMAD protein complex Hs cellular component 670 0.0
promoter-specific chromatin binding Hs molecular function 670 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 4.8E-49
ATP binding Pfam molecular function 4.8E-49

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