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Gene Card

Best human hits

SRBD1; SUPT6H

Species

B.leachii

Unique Gene ID

Boleac.g00005563

Gene Model ID

Boleac.CG.SB_v3.S234.g05563

Location

S234:96104..107145

Transcript Models and Sequences

  Boleac.CG.SB_v3.S234.g05563.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

18 results

IPR Term Analysis Definition
TF_Spt6 PANTHER Transcription elongation factor Spt6
YqgF/RNaseH-like_dom SMART YqgF/RNase H-like domain
S1_domain ProSiteProfiles S1 domain
Spt6_dom Pfam Death-like domain of Spt6
Spt6_acidic_N_dom Pfam Spt6 acidic, N-terminal domain
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
Spt6_SH2 Pfam Spt6, SH2 domain
Spt6_SH2_C CDD Spt6, SH2 domain, C terminus
TF_Spt6 PIRSF Transcription elongation factor Spt6
S1_domain Pfam S1 domain
Spt6_HTH_DNA-bd_dom Pfam Helix-turn-helix DNA-binding domain of Spt6
RNaseH-like_sf SUPERFAMILY Ribonuclease H-like superfamily
Spt6_SH2_N CDD Spt6, SH2 domain, N terminus
SH2_dom_sf Gene3D SH2 domain superfamily
Spt6_HHH Pfam Transcription elongation factor Spt6, helix-hairpin-helix motif
Spt6_YqgF Pfam Transcription elongation factor Spt6, YqgF domain
RuvA_2-like SUPERFAMILY RuvA domain 2-like
SH2_dom_sf SUPERFAMILY SH2 domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
transcription factor activity, core RNA polymerase II binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleobase-containing compound metabolic process Hs biological process
chromatin remodeling Hs biological process
chromatin silencing Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
mRNA processing Hs biological process
transcription elongation factor complex Hs cellular component
RNA splicing Hs biological process
regulation of mRNA export from nucleus Hs biological process
viral process Hs biological process
nucleosome binding Hs molecular function
regulation of DNA-templated transcription, elongation Hs biological process
positive regulation of transcription elongation from RNA polymerase II promoter Hs biological process
nucleosome organization Hs biological process
transcriptionally active chromatin Hs cellular component
histone binding Hs molecular function
mRNA transcription from RNA polymerase II promoter Hs biological process
regulation of mRNA processing Hs biological process
mRNA transport Hs biological process
negative regulation of histone H3-K27 methylation Hs biological process
chromatin maintenance Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription factor activity, core RNA polymerase II binding Hs molecular function 1636 0.0
nucleic acid binding Hs molecular function 1636 0.0
DNA binding Hs molecular function 1636 0.0
transcription factor activity, sequence-specific DNA binding Hs molecular function 1636 0.0
RNA binding Hs molecular function 1636 0.0
protein binding Hs molecular function 1636 0.0
nucleus Hs cellular component 1636 0.0
nucleoplasm Hs cellular component 1636 0.0
transcription elongation factor complex Hs cellular component 1636 0.0
nucleosome binding Hs molecular function 1636 0.0
transcriptionally active chromatin Hs cellular component 1636 0.0
histone binding Hs molecular function 1636 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
transcription factor activity, core RNA polymerase II binding PIRSF molecular function 0.0
nucleic acid binding Pfam molecular function 6.3E-6
nucleobase-containing compound metabolic process SMART biological process 8.2E-7
regulation of transcription from RNA polymerase II promoter PIRSF biological process 0.0
regulation of DNA-templated transcription, elongation PIRSF biological process 0.0

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