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Gene Card

Best human hits

SAFB; SAFB2; SLTM

Species

B.leachii

Unique Gene ID

Boleac.g00005640

Gene Model ID

Boleac.CG.SB_v3.S238.g05640

Location

S238:1326..14803

Transcript Models and Sequences

  Boleac.CG.SB_v3.S238.g05640.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
RRM_dom Pfam RNA recognition motif domain
SAP_dom_sf Gene3D SAP domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
SAP_dom_sf SUPERFAMILY SAP domain superfamily
SAP_dom ProSiteProfiles SAP domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom SMART RNA recognition motif domain
SAP_dom Pfam SAP domain
SAP_dom SMART SAP domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
core promoter binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
double-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
chromatin organization Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
apoptotic process Hs biological process
nuclear body Hs cellular component
intracellular estrogen receptor signaling pathway Hs biological process
growth Hs biological process
hormone metabolic process Hs biological process
identical protein binding Hs molecular function
intracellular membrane-bounded organelle Hs cellular component
sequence-specific DNA binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process
regulation of mRNA processing Hs biological process
regulation of androgen receptor signaling pathway Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
core promoter binding Hs molecular function 140 1.14e-33
nucleic acid binding Hs molecular function 140 1.14e-33
DNA binding Hs molecular function 140 1.14e-33
chromatin binding Hs molecular function 140 1.14e-33
double-stranded DNA binding Hs molecular function 140 1.14e-33
RNA binding Hs molecular function 140 1.14e-33
protein binding Hs molecular function 140 1.14e-33
nucleus Hs cellular component 140 1.14e-33
nucleoplasm Hs cellular component 140 1.14e-33
cytoplasm Hs cellular component 140 1.16e-33
nuclear body Hs cellular component 140 1.16e-33
identical protein binding Hs molecular function 140 1.16e-33
intracellular membrane-bounded organelle Hs cellular component 140 1.16e-33
sequence-specific DNA binding Hs molecular function 140 1.14e-33
extracellular exosome Hs cellular component 140 1.16e-33

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 1.9E-22

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