Aniseed - Gene card

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Gene 'Boleac.CG.SB_v3.S3.g...'

Gene Card

Best human hits

FUBP1; FUBP3; KHSRP

Species

B.leachii

Unique Gene ID

Boleac.g00007136

Gene Model ID

Boleac.CG.SB_v3.S3.g07136

Location

S3:848409..855804

Transcript Models and Sequences

Boleac.CG.SB_v3.S3.g07136.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
KH_dom	SMART	K Homology domain
KH_dom_type_1_sf	Gene3D	K Homology domain, type 1 superfamily
KH_dom_type_1_sf	SUPERFAMILY	K Homology domain, type 1 superfamily
KH_dom_type_1	Pfam	K Homology domain, type 1

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

32 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
exosome (RNase complex)	Hs	cellular component
RNA splicing, via transesterification reactions	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
mRNA processing	Hs	biological process
mRNA catabolic process	Hs	biological process
RNA splicing	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
miRNA metabolic process	Hs	biological process
positive regulation of gene expression	Hs	biological process
membrane	Hs	cellular component
mRNA 3'-UTR AU-rich region binding	Hs	molecular function
regulation of mRNA stability	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
mRNA transport	Hs	biological process
positive regulation of mRNA catabolic process	Hs	biological process
3'-UTR-mediated mRNA destabilization	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
exosome (RNase complex)	Hs	cellular component	291	2.93e-89
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	304	2.25e-95
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	304	2.25e-95
nucleic acid binding	Hs	molecular function	306	3.49e-95
DNA binding	Hs	molecular function	306	3.49e-95
single-stranded DNA binding	Hs	molecular function	306	3.49e-95
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	306	3.49e-95
RNA binding	Hs	molecular function	306	3.49e-95
mRNA binding	Hs	molecular function	291	2.93e-89
protein binding	Hs	molecular function	306	3.49e-95
nucleus	Hs	cellular component	306	3.49e-95
nucleoplasm	Hs	cellular component	306	3.49e-95
cytoplasm	Hs	cellular component	304	2.25e-95
cytosol	Hs	cellular component	291	2.93e-89
cytoplasmic stress granule	Hs	cellular component	291	2.93e-89
membrane	Hs	cellular component	304	2.25e-95
mRNA 3'-UTR AU-rich region binding	Hs	molecular function	291	2.93e-89

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	3.6E-16
RNA binding	Gene3D	molecular function	5.2E-29