Aniseed - Gene card

Gene Card

Best human hits

IRX4; IRX5; IRX6

Species

B.leachii

Unique Gene ID

Boleac.g00011365

Gene Model ID

Boleac.CG.SB_v3.S54.g11365

Location

S54:8565..13301

Transcript Models and Sequences

Boleac.CG.SB_v3.S54.g11365.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_KN_domain	Pfam	Homeobox KN domain
Homeobox_dom	SMART	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Iroquois_homeo	SMART	Iroquois-class homeodomain protein
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	ProSiteProfiles	Homeobox domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
cytoplasm	Hs	cellular component
multicellular organism development	Hs	biological process
mesoderm development	Hs	biological process
axon	Hs	cellular component
negative regulation of neuron differentiation	Hs	biological process
positive regulation of neuron differentiation	Hs	biological process

GO (Blast)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	161	3.93e-43
DNA binding	Hs	molecular function	161	3.93e-43
vitamin D binding	Hs	molecular function	157	1.87e-41
nucleus	Hs	cellular component	161	3.93e-43
sequence-specific DNA binding	Hs	molecular function	161	3.93e-43

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	1.41E-17
nucleus	SMART	cellular component	3.5E-4
regulation of transcription, DNA-templated	Pfam	biological process	1.9E-15
sequence-specific DNA binding	ProSitePatterns	molecular function