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Gene Card

Best human hits

SMC1B; SMC2; SMC3

Species

B.schlosseri

Unique Gene ID

Boschl.g00005327

Gene Model ID

Boschl.CG.Botznik2013.chr10.g05327

Location

chr10:14210020..14213644

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chr10.g05327.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
SMC_hinge_sf SUPERFAMILY SMCs flexible hinge superfamily
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
SMC_hinge SMART SMCs flexible hinge
SMC_hinge Pfam SMCs flexible hinge
SMC PIRSF Structural maintenance of chromosomes protein
RecF/RecN/SMC_N Pfam RecF/RecN/SMC, N-terminal

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
mitotic cell cycle Hs biological process
chromosome, centromeric region Hs cellular component
chromatin Hs cellular component
lateral element Hs cellular component
chromatin binding Hs molecular function
microtubule motor activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
basement membrane Hs cellular component
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
chromosome Hs cellular component
cytosol Hs cellular component
regulation of DNA replication Hs biological process
DNA repair Hs biological process
cellular response to DNA damage stimulus Hs biological process
cell cycle Hs biological process
sister chromatid cohesion Hs biological process
cohesin complex Hs cellular component
nuclear matrix Hs cellular component
stem cell population maintenance Hs biological process
meiotic cohesin complex Hs cellular component
negative regulation of DNA endoreduplication Hs biological process
nuclear meiotic cohesin complex Hs cellular component
mediator complex binding Hs molecular function
macromolecular complex binding Hs molecular function
protein heterodimerization activity Hs molecular function
beta-tubulin binding Hs molecular function
chromosome organization Hs biological process
cell division Hs biological process
meiotic cell cycle Hs biological process
dynein complex binding Hs molecular function
mitotic spindle pole Hs cellular component
regulation of mitotic spindle assembly Hs biological process

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 1288 0.0
nuclear chromosome Hs cellular component 254 3.32e-69
chromosome, centromeric region Hs cellular component 1288 0.0
chromatin Hs cellular component 1288 0.0
condensed chromosome Hs cellular component 254 3.32e-69
condensed nuclear chromosome Hs cellular component 139 4.29e-33
synaptonemal complex Hs cellular component 139 4.29e-33
condensin complex Hs cellular component 254 3.32e-69
lateral element Hs cellular component 1288 0.0
DNA binding Hs molecular function 139 4.29e-33
chromatin binding Hs molecular function 1288 0.0
microtubule motor activity Hs molecular function 1288 0.0
protein binding Hs molecular function 1288 0.0
ATP binding Hs molecular function 1288 0.0
basement membrane Hs cellular component 1288 0.0
intracellular Hs cellular component 1288 0.0
nucleus Hs cellular component 1288 0.0
nucleoplasm Hs cellular component 1288 0.0
chromosome Hs cellular component 1288 0.0
nucleolus Hs cellular component 254 3.32e-69
cytoplasm Hs cellular component 254 3.32e-69
cytosol Hs cellular component 1288 0.0
cohesin complex Hs cellular component 1288 0.0
nuclear matrix Hs cellular component 1288 0.0
meiotic cohesin complex Hs cellular component 1288 0.0
nuclear meiotic cohesin complex Hs cellular component 1288 0.0
mediator complex binding Hs molecular function 1288 0.0
macromolecular complex binding Hs molecular function 1288 0.0
protein heterodimerization activity Hs molecular function 1288 0.0
beta-tubulin binding Hs molecular function 1288 0.0
extracellular exosome Hs cellular component 254 3.32e-69
dynein complex binding Hs molecular function 1288 0.0
mitotic spindle pole Hs cellular component 1288 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 4.84E-39
ATP binding SUPERFAMILY molecular function 4.84E-39
chromosome SUPERFAMILY cellular component 4.84E-39
chromosome organization SUPERFAMILY biological process 4.84E-39

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