Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

SGSM1; SGSM2; TBC1D25

Species

B.schlosseri

Unique Gene ID

Boschl.g00037736

Gene Model ID

Boschl.CG.Botznik2013.chr2.g37736

Location

chr2:8814551..8819872

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chr2.g37736.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Rab-GTPase-TBC_dom ProSiteProfiles Rab-GTPase-TBC domain
Rab-GTPase-TBC_dom Pfam Rab-GTPase-TBC domain
Rab-GTPase_TBC_sf SUPERFAMILY Rab-GTPase-TBC domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
GTPase activator activity Hs molecular function
cytoplasm Hs cellular component
Golgi apparatus Hs cellular component
cytosol Hs cellular component
intracellular protein transport Hs biological process
endomembrane system Hs cellular component
membrane Hs cellular component
Rab GTPase binding Hs molecular function
cytoplasmic vesicle membrane Hs cellular component
regulation of vesicle fusion Hs biological process
cytoplasmic vesicle Hs cellular component
melanosome Hs cellular component
positive regulation of GTPase activity Hs biological process
activation of GTPase activity Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
GTPase activator activity Hs molecular function 279 2.63e-88
protein binding Hs molecular function 92.4 2.84e-22
cytoplasm Hs cellular component 279 2.63e-88
autophagosome Hs cellular component 92.4 2.84e-22
Golgi apparatus Hs cellular component 279 2.63e-88
cytosol Hs cellular component 279 2.63e-88
endomembrane system Hs cellular component 279 2.63e-88
membrane Hs cellular component 279 2.63e-88
Rab GTPase binding Hs molecular function 279 2.63e-88
cytoplasmic vesicle membrane Hs cellular component 279 2.63e-88
cytoplasmic vesicle Hs cellular component 279 2.63e-88
melanosome Hs cellular component 266 6.84e-84

GO (InterProScan)

No result

GO Term Analysis Type e-value