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Gene Card

Best human hits

NR1H2; NR1H3; NR1H4

Species

B.schlosseri

Unique Gene ID

Boschl.g00044797

Gene Model ID

Boschl.CG.Botznik2013.chr9.g44797

Location

chr9:16160442..16172136

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chr9.g44797.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Znf_hrmn_rcpt SMART Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd Pfam Nuclear hormone receptor, ligand-binding domain
Nuclear_hrmn_rcpt PRINTS Nuclear hormone receptor
Znf_hrmn_rcpt ProSitePatterns Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd SMART Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt PRINTS Zinc finger, nuclear hormone receptor-type
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt ProSiteProfiles Zinc finger, nuclear hormone receptor-type
NHR_like_dom_sf SUPERFAMILY Nuclear hormone receptor-like domain superfamily
Znf_hrmn_rcpt Pfam Zinc finger, nuclear hormone receptor-type

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

56 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function
immune system process Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
steroid hormone receptor activity Hs molecular function
transcription coactivator activity Hs molecular function
transcription corepressor activity Hs molecular function
nuclear receptor activity Hs molecular function
thyroid hormone receptor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nuclear euchromatin Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
inflammatory response Hs biological process
cell-cell junction assembly Hs biological process
signal transduction Hs biological process
Notch signaling pathway Hs biological process
bile acid metabolic process Hs biological process
zinc ion binding Hs molecular function
bile acid and bile salt transport Hs biological process
ligand-dependent nuclear receptor binding Hs molecular function
intracellular receptor signaling pathway Hs biological process
bile acid binding Hs molecular function
negative regulation of NF-kappaB transcription factor activity Hs biological process
toll-like receptor 4 signaling pathway Hs biological process
toll-like receptor 9 signaling pathway Hs biological process
histone H3-R17 methylation Hs biological process
positive regulation of insulin secretion involved in cellular response to glucose stimulus Hs biological process
bile acid receptor activity Hs molecular function
glucose homeostasis Hs biological process
defense response to bacterium Hs biological process
negative regulation of apoptotic process Hs biological process
negative regulation of I-kappaB kinase/NF-kappaB signaling Hs biological process
steroid hormone mediated signaling pathway Hs biological process
sequence-specific DNA binding Hs molecular function
innate immune response Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of insulin receptor signaling pathway Hs biological process
metal ion binding Hs molecular function
retinoid X receptor binding Hs molecular function
negative regulation of inflammatory response Hs biological process
fatty acid homeostasis Hs biological process
regulation of insulin secretion involved in cellular response to glucose stimulus Hs biological process
triglyceride homeostasis Hs biological process
cellular response to lipopolysaccharide Hs biological process
chenodeoxycholic acid binding Hs molecular function

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 154 3.09e-42
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 278 3.56e-89
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 214 1.13e-64
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 278 3.56e-89
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 278 3.56e-89
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 278 3.56e-89
RNA polymerase II transcription factor activity, sequence-specific transcription regulatory region DNA binding Hs molecular function 214 1.13e-64
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 278 3.56e-89
DNA binding Hs molecular function 278 3.56e-89
transcription factor activity, sequence-specific DNA binding Hs molecular function 278 3.56e-89
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 278 3.56e-89
steroid hormone receptor activity Hs molecular function 278 3.56e-89
transcription coactivator activity Hs molecular function 278 3.56e-89
transcription corepressor activity Hs molecular function 278 3.56e-89
nuclear receptor activity Hs molecular function 278 3.56e-89
thyroid hormone receptor activity Hs molecular function 278 3.56e-89
protein binding Hs molecular function 278 3.56e-89
nucleus Hs cellular component 278 3.56e-89
nucleoplasm Hs cellular component 278 3.56e-89
nuclear euchromatin Hs cellular component 278 3.56e-89
cytoplasm Hs cellular component 214 1.13e-64
zinc ion binding Hs molecular function 278 3.56e-89
cholesterol binding Hs molecular function 154 3.09e-42
ligand-dependent nuclear receptor binding Hs molecular function 278 3.56e-89
bile acid binding Hs molecular function 278 3.56e-89
sterol response element binding Hs molecular function 154 3.09e-42
apolipoprotein A-I receptor binding Hs molecular function 214 1.13e-64
bile acid receptor activity Hs molecular function 278 3.56e-89
receptor complex Hs cellular component 154 3.09e-42
sequence-specific DNA binding Hs molecular function 278 3.56e-89
transcription regulatory region DNA binding Hs molecular function 154 3.09e-42
metal ion binding Hs molecular function 278 3.56e-89
retinoid X receptor binding Hs molecular function 278 3.56e-89
ATPase binding Hs molecular function 214 1.13e-64
RNA polymerase II transcription factor complex Hs cellular component 154 3.09e-42
chenodeoxycholic acid binding Hs molecular function 278 3.56e-89

GO (InterProScan)

8 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 3.9E-20
transcription factor activity, sequence-specific DNA binding SMART molecular function 5.0E-35
steroid hormone receptor activity PRINTS molecular function 3.9E-20
nucleus SMART cellular component 5.0E-35
regulation of transcription, DNA-templated SMART biological process 5.0E-35
zinc ion binding SMART molecular function 5.0E-35
steroid hormone mediated signaling pathway SMART biological process 1.8E-24
sequence-specific DNA binding SMART molecular function 5.0E-35

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