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GENE CARD

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Gene Card

Best human hits

EXOSC7; EXOSC8; EXOSC9

Species

B.schlosseri

Unique Gene ID

Boschl.g00009882

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g09882

Location

chrUn:63866343..63868867

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g09882.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Rrp45 CDD Exosome complex component RRP45
ExoRNase_PH_dom2_sf SUPERFAMILY Exoribonuclease, PH domain 2 superfamily
Ribosomal_S5_D2-typ_fold SUPERFAMILY Ribosomal protein S5 domain 2-type fold
PNPase/RNase_PH_dom_sf Gene3D PNPase/RNase PH domain superfamily
ExoRNase_PH_dom2 Pfam Exoribonuclease, phosphorolytic domain 2
ExoRNase_PH_dom1 Pfam Exoribonuclease, phosphorolytic domain 1

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
3'-5'-exoribonuclease activity Hs molecular function
nuclear exosome (RNase complex) Hs cellular component
cytoplasmic exosome (RNase complex) Hs cellular component
exosome (RNase complex) Hs cellular component
nuclear chromosome Hs cellular component
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Hs biological process
nuclear-transcribed mRNA catabolic process Hs biological process
RNA polymerase II activating transcription factor binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
rRNA processing Hs biological process
RNA processing Hs biological process
immune response Hs biological process
AU-rich element binding Hs molecular function
positive regulation of cell growth Hs biological process
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' Hs biological process
U1 snRNA 3'-end processing Hs biological process
U4 snRNA 3'-end processing Hs biological process
U5 snRNA 3'-end processing Hs biological process
regulation of mRNA stability Hs biological process
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
extracellular exosome Hs cellular component
nuclear mRNA surveillance Hs biological process
nuclear polyadenylation-dependent rRNA catabolic process Hs biological process
nuclear polyadenylation-dependent tRNA catabolic process Hs biological process
nuclear polyadenylation-dependent mRNA catabolic process Hs biological process

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
3'-5'-exoribonuclease activity Hs molecular function 256 3.68e-81
nuclear exosome (RNase complex) Hs cellular component 256 3.68e-81
cytoplasmic exosome (RNase complex) Hs cellular component 256 3.68e-81
exosome (RNase complex) Hs cellular component 256 3.68e-81
nuclear chromosome Hs cellular component 256 3.68e-81
RNA polymerase II activating transcription factor binding Hs molecular function 256 3.68e-81
RNA binding Hs molecular function 256 3.68e-81
protein binding Hs molecular function 256 3.68e-81
nucleus Hs cellular component 256 3.68e-81
nucleoplasm Hs cellular component 256 3.68e-81
nucleolus Hs cellular component 256 3.68e-81
cytoplasm Hs cellular component 256 3.68e-81
cytosol Hs cellular component 256 3.68e-81
AU-rich element binding Hs molecular function 256 3.68e-81
identical protein binding Hs molecular function 106 2.61e-26
extracellular exosome Hs cellular component 256 3.68e-81

GO (InterProScan)

2 results

GO Term Analysis Type e-value
exosome (RNase complex) CDD cellular component 8.01511E-123
RNA processing CDD biological process 8.01511E-123

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