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Gene Card

Best human hits

SMARCB1

Species

B.schlosseri

Unique Gene ID

Boschl.g00018652

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g18652

Location

chrUn:121223980..121225015

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g18652.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
SNF5 Pfam SNF5/SMARCB1/INI1
SNF5 PANTHER SNF5/SMARCB1/INI1

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear chromosome Hs cellular component
nuclear chromatin Hs cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function
RNA polymerase I transcriptional preinitiation complex assembly Hs biological process
fibrillar center Hs cellular component
XY body Hs cellular component
p53 binding Hs molecular function
DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
DNA repair Hs biological process
chromatin organization Hs biological process
nucleosome disassembly Hs biological process
chromatin remodeling Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
cell cycle Hs biological process
nervous system development Hs biological process
negative regulation of cell proliferation Hs biological process
DNA integration Hs biological process
viral process Hs biological process
SWI/SNF complex Hs cellular component
cell differentiation Hs biological process
Tat protein binding Hs molecular function
nucleosomal DNA binding Hs molecular function
macromolecular complex Hs cellular component
ATP-dependent chromatin remodeling Hs biological process
intracellular membrane-bounded organelle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of sequence-specific DNA binding transcription factor activity Hs biological process
npBAF complex Hs cellular component
nBAF complex Hs cellular component
positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromosome Hs cellular component 430 5.64e-151
nuclear chromatin Hs cellular component 430 5.64e-151
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 430 5.64e-151
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 430 5.64e-151
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function 430 5.64e-151
fibrillar center Hs cellular component 430 5.64e-151
XY body Hs cellular component 430 5.64e-151
p53 binding Hs molecular function 430 5.64e-151
DNA binding Hs molecular function 430 5.64e-151
transcription coactivator activity Hs molecular function 430 5.64e-151
protein binding Hs molecular function 430 5.64e-151
nucleus Hs cellular component 430 5.64e-151
nucleoplasm Hs cellular component 430 5.64e-151
nucleolus Hs cellular component 430 5.64e-151
SWI/SNF complex Hs cellular component 430 5.64e-151
Tat protein binding Hs molecular function 430 5.64e-151
nucleosomal DNA binding Hs molecular function 430 5.64e-151
macromolecular complex Hs cellular component 430 5.64e-151
intracellular membrane-bounded organelle Hs cellular component 430 5.64e-151
npBAF complex Hs cellular component 430 5.64e-151
nBAF complex Hs cellular component 430 5.64e-151

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nuclear chromosome PANTHER cellular component 4.0E-82
chromatin remodeling PANTHER biological process 4.0E-82

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