Aniseed - Gene card

Gene Card

Best human hits

FMR1; FXR1; FXR2

Species

B.schlosseri

Unique Gene ID

Boschl.g00029289

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g29289

Location

chrUn:192383539..192385946

Transcript Models and Sequences

Boschl.CG.Botznik2013.chrUn.g29289.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Agenet-like_dom	Pfam	Agenet-like domain
KH_dom	SMART	K Homology domain
Agenet-like_dom	ProSiteProfiles	Agenet-like domain
KH_dom_type_1_sf	Gene3D	K Homology domain, type 1 superfamily
KH_dom_type_1	Pfam	K Homology domain, type 1
KH_dom_type_1_sf	SUPERFAMILY	K Homology domain, type 1 superfamily

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

72 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromosome, centromeric region	Hs	cellular component	359	9.63e-118
G-quadruplex RNA binding	Hs	molecular function	426	1.20e-143
nucleic acid binding	Hs	molecular function	426	1.20e-143
chromatin binding	Hs	molecular function	359	9.63e-118
RNA binding	Hs	molecular function	426	1.20e-143
mRNA binding	Hs	molecular function	426	1.20e-143
mRNA 3'-UTR binding	Hs	molecular function	426	1.20e-143
protein binding	Hs	molecular function	426	1.20e-143
nucleus	Hs	cellular component	426	1.20e-143
nucleoplasm	Hs	cellular component	359	9.63e-118
chromosome	Hs	cellular component	359	9.63e-118
nucleolus	Hs	cellular component	426	1.20e-143
cytoplasm	Hs	cellular component	426	1.20e-143
cytosol	Hs	cellular component	426	1.20e-143
polysome	Hs	cellular component	426	1.20e-143
mRNA cap binding complex	Hs	cellular component	359	9.63e-118
plasma membrane	Hs	cellular component	359	9.63e-118
microtubule binding	Hs	molecular function	359	9.63e-118
poly(U) RNA binding	Hs	molecular function	359	9.63e-118
chromocenter	Hs	cellular component	359	9.63e-118
cytoplasmic stress granule	Hs	cellular component	359	9.63e-118
postsynaptic density	Hs	cellular component	359	9.63e-118
Cajal body	Hs	cellular component	359	9.63e-118
membrane	Hs	cellular component	426	1.20e-143
viral replication complex	Hs	cellular component	359	9.63e-118
extrinsic component of plasma membrane	Hs	cellular component	359	9.63e-118
cytosolic large ribosomal subunit	Hs	cellular component	419	2.12e-140
cell junction	Hs	cellular component	359	9.63e-118
translation repressor activity	Hs	molecular function	359	9.63e-118
axon	Hs	cellular component	426	1.20e-143
dendrite	Hs	cellular component	426	1.20e-143
growth cone	Hs	cellular component	359	9.63e-118
intracellular ribonucleoprotein complex	Hs	cellular component	359	9.63e-118
translation initiation factor binding	Hs	molecular function	359	9.63e-118
filopodium tip	Hs	cellular component	359	9.63e-118
SMN complex	Hs	cellular component	359	9.63e-118
RNA strand annealing activity	Hs	molecular function	426	1.20e-143
poly(G) binding	Hs	molecular function	359	9.63e-118
methylated histone binding	Hs	molecular function	359	9.63e-118
siRNA binding	Hs	molecular function	359	9.63e-118
miRNA binding	Hs	molecular function	359	9.63e-118
RNA stem-loop binding	Hs	molecular function	359	9.63e-118
ribonucleoprotein granule	Hs	cellular component	426	1.20e-143
cytoplasmic ribonucleoprotein granule	Hs	cellular component	359	9.63e-118
presynaptic membrane	Hs	cellular component	359	9.63e-118
polysomal ribosome	Hs	cellular component	359	9.63e-118
identical protein binding	Hs	molecular function	419	2.12e-140
protein homodimerization activity	Hs	molecular function	426	1.20e-143
cell projection	Hs	cellular component	359	9.63e-118
neuron projection	Hs	cellular component	359	9.63e-118
ribosome binding	Hs	molecular function	359	9.63e-118
costamere	Hs	cellular component	426	1.20e-143
dendritic spine	Hs	cellular component	426	1.20e-143
perikaryon	Hs	cellular component	359	9.63e-118
axon terminus	Hs	cellular component	359	9.63e-118
ion channel binding	Hs	molecular function	359	9.63e-118
synapse	Hs	cellular component	359	9.63e-118
postsynaptic membrane	Hs	cellular component	359	9.63e-118
protein heterodimerization activity	Hs	molecular function	426	1.20e-143
mRNA 5'-UTR binding	Hs	molecular function	359	9.63e-118
perinuclear region of cytoplasm	Hs	cellular component	426	1.20e-143
extracellular exosome	Hs	cellular component	419	2.12e-140
dynein complex binding	Hs	molecular function	359	9.63e-118
neuronal ribonucleoprotein granule	Hs	cellular component	359	9.63e-118
glial cell projection	Hs	cellular component	359	9.63e-118
presynapse	Hs	cellular component	359	9.63e-118
postsynapse	Hs	cellular component	359	9.63e-118
dendritic filopodium	Hs	cellular component	359	9.63e-118
messenger ribonucleoprotein complex	Hs	cellular component	359	9.63e-118
growth cone filopodium	Hs	cellular component	359	9.63e-118
sequence-specific mRNA binding	Hs	molecular function	359	9.63e-118
ribonucleoprotein complex	Hs	cellular component	359	9.63e-118

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	2.4E-4
RNA binding	Gene3D	molecular function	2.9E-26