Aniseed - Gene card

Gene Card

Best human hits

AGO1; AGO2; AGO3

Species

B.schlosseri

Unique Gene ID

Boschl.g00035784

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g35784

Location

chrUn:234023548..234028612

Transcript Models and Sequences

Boschl.CG.Botznik2013.chrUn.g35784.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Piwi	SMART	Piwi domain
RNaseH_sf	Gene3D	Ribonuclease H superfamily
Piwi	Pfam	Piwi domain
RNaseH-like_sf	SUPERFAMILY	Ribonuclease H-like superfamily
ArgoL2	Pfam	Argonaute linker 2 domain
PAZ_dom_sf	SUPERFAMILY	PAZ domain superfamily
Argonaute_Mid_dom	Pfam	Protein argonaute, Mid domain
PAZ_dom	ProSiteProfiles	PAZ domain
PAZ_dom	Pfam	PAZ domain
Piwi	ProSiteProfiles	Piwi domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

76 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA 7-methylguanosine cap binding	Hs	molecular function
condensed nuclear chromosome	Hs	cellular component
P-body	Hs	cellular component
nuclear-transcribed mRNA catabolic process	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core binding	Hs	molecular function
core promoter binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
double-stranded RNA binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
translation initiation factor activity	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
endoribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
polysome	Hs	cellular component
mRNA cap binding complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
mRNA catabolic process	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
regulation of translation	Hs	biological process
Wnt signaling pathway, calcium modulating pathway	Hs	biological process
protein C-terminus binding	Hs	molecular function
post-embryonic development	Hs	biological process
RNA secondary structure unwinding	Hs	biological process
miRNA metabolic process	Hs	biological process
positive regulation of gene expression	Hs	biological process
membrane	Hs	cellular component
RISC complex	Hs	cellular component
negative regulation of angiogenesis	Hs	biological process
hydrolase activity	Hs	molecular function
cell junction	Hs	cellular component
production of siRNA involved in RNA interference	Hs	biological process
dendrite	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
gene silencing by RNA	Hs	biological process
pre-miRNA processing	Hs	biological process
micro-ribonucleoprotein complex	Hs	cellular component
siRNA loading onto RISC involved in RNA interference	Hs	biological process
production of miRNAs involved in gene silencing by miRNA	Hs	biological process
siRNA binding	Hs	molecular function
miRNA binding	Hs	molecular function
miRNA mediated inhibition of translation	Hs	biological process
mRNA cleavage involved in gene silencing by miRNA	Hs	biological process
miRNA loading onto RISC involved in gene silencing by miRNA	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
transcription regulatory region DNA binding	Hs	molecular function
positive regulation of angiogenesis	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of translational initiation	Hs	biological process
metal ion binding	Hs	molecular function
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
regulation of gene silencing by miRNA	Hs	biological process
extracellular exosome	Hs	cellular component
endoribonuclease activity, cleaving siRNA-paired mRNA	Hs	molecular function
RISC-loading complex	Hs	cellular component
regulation of stem cell proliferation	Hs	biological process
RNA phosphodiester bond hydrolysis, endonucleolytic	Hs	biological process
endoribonuclease activity, cleaving miRNA-paired mRNA	Hs	molecular function
mRNA cap binding	Hs	molecular function
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Hs	biological process
positive regulation of trophoblast cell migration	Hs	biological process
synaptonemal complex assembly	Hs	biological process
male meiotic nuclear division	Hs	biological process
male gonad development	Hs	biological process
nuclear body	Hs	cellular component
regulation of cell morphogenesis	Hs	biological process
negative regulation of apoptotic process	Hs	biological process

GO (Blast)

40 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
RNA 7-methylguanosine cap binding	Hs	molecular function	808
condensed nuclear chromosome	Hs	cellular component	780
P-body	Hs	cellular component	808
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	791
RNA polymerase II core binding	Hs	molecular function	808
core promoter binding	Hs	molecular function	808
nucleic acid binding	Hs	molecular function	808
RNA binding	Hs	molecular function	808
double-stranded RNA binding	Hs	molecular function	808
single-stranded RNA binding	Hs	molecular function	808
mRNA binding	Hs	molecular function	808
translation initiation factor activity	Hs	molecular function	808
nuclease activity	Hs	molecular function	808
endonuclease activity	Hs	molecular function	808
endoribonuclease activity	Hs	molecular function	808
protein binding	Hs	molecular function	808
nucleus	Hs	cellular component	808
nucleoplasm	Hs	cellular component	808
cytoplasm	Hs	cellular component	808
cytosol	Hs	cellular component	808
polysome	Hs	cellular component	808
mRNA cap binding complex	Hs	cellular component	808
protein C-terminus binding	Hs	molecular function	808
membrane	Hs	cellular component	808
RISC complex	Hs	cellular component	808
hydrolase activity	Hs	molecular function	808
cell junction	Hs	cellular component	808
dendrite	Hs	cellular component	808
intracellular ribonucleoprotein complex	Hs	cellular component	808
micro-ribonucleoprotein complex	Hs	cellular component	808
siRNA binding	Hs	molecular function	808
miRNA binding	Hs	molecular function	808
cytoplasmic ribonucleoprotein granule	Hs	cellular component	780
transcription regulatory region DNA binding	Hs	molecular function	791
metal ion binding	Hs	molecular function	808
extracellular exosome	Hs	cellular component	808
endoribonuclease activity, cleaving siRNA-paired mRNA	Hs	molecular function	808
RISC-loading complex	Hs	cellular component	808
endoribonuclease activity, cleaving miRNA-paired mRNA	Hs	molecular function	808
mRNA cap binding	Hs	molecular function	808

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Gene3D	molecular function	2.0E-83
protein binding	SUPERFAMILY	molecular function	1.1E-41