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  1. Gene 'Boschl.CG.Botznik201...'

Gene Card

Best human hits

COL14A1; COL7A1; TNR

Species

B.schlosseri

Unique Gene ID

Boschl.g00054339

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g54339

Location

chrUn:330586772..330587633

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g54339.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
FN3_dom CDD Fibronectin type III
FN3_dom ProSiteProfiles Fibronectin type III
FN3_sf SUPERFAMILY Fibronectin type III superfamily
Ig-like_fold Gene3D Immunoglobulin-like fold
FN3_dom Pfam Fibronectin type III
FN3_dom SMART Fibronectin type III

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
Golgi membrane Hs cellular component 48.5 1.91e-06
RNA binding Hs molecular function 52.4 9.32e-08
serine-type endopeptidase inhibitor activity Hs molecular function 48.5 1.91e-06
extracellular matrix structural constituent Hs molecular function 52.4 9.32e-08
protein binding Hs molecular function 52.8 5.94e-08
collagen binding Hs molecular function 52.4 9.32e-08
extracellular region Hs cellular component 52.8 5.94e-08
proteinaceous extracellular matrix Hs cellular component 52.8 5.94e-08
collagen trimer Hs cellular component 52.4 9.32e-08
collagen type VII trimer Hs cellular component 48.5 1.91e-06
collagen type XIV trimer Hs cellular component 52.4 9.32e-08
basement membrane Hs cellular component 48.5 1.91e-06
extracellular space Hs cellular component 52.4 9.32e-08
endoplasmic reticulum lumen Hs cellular component 52.4 9.32e-08
cell surface Hs cellular component 52.8 5.94e-08
COPII-coated ER to Golgi transport vesicle Hs cellular component 48.5 1.91e-06
peptidase inhibitor activity Hs molecular function 48.5 1.91e-06
protein binding, bridging Hs molecular function 52.4 9.32e-08
extracellular matrix Hs cellular component 52.4 9.32e-08
endoplasmic reticulum-Golgi intermediate compartment membrane Hs cellular component 48.5 1.91e-06
identical protein binding Hs molecular function 48.5 1.91e-06
membrane raft Hs cellular component 52.8 5.94e-08
extracellular exosome Hs cellular component 52.4 9.32e-08
perineuronal net Hs cellular component 52.8 5.94e-08

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 3.85E-12





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