Login
Help

GENE CARD

Submit your Data

  1. Gene 'Boschl.CG.Botznik201...'

Gene Card

Best human hits

COL14A1; PTPRB; TNXB

Species

B.schlosseri

Unique Gene ID

Boschl.g00065374

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g65374

Location

chrUn:376435977..376438747

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g65374.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
FN3_dom ProSiteProfiles Fibronectin type III
FN3_dom CDD Fibronectin type III
FN3_sf SUPERFAMILY Fibronectin type III superfamily
Ig-like_fold Gene3D Immunoglobulin-like fold
FN3_dom SMART Fibronectin type III
FN3_dom Pfam Fibronectin type III

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA binding Hs molecular function 63.5 9.48e-12
phosphoprotein phosphatase activity Hs molecular function 57.4 1.23e-09
protein tyrosine phosphatase activity Hs molecular function 57.4 1.23e-09
transmembrane receptor protein tyrosine phosphatase activity Hs molecular function 57.4 1.23e-09
integrin binding Hs molecular function 55.5 5.09e-09
extracellular matrix structural constituent Hs molecular function 63.5 9.48e-12
protein binding Hs molecular function 63.5 9.48e-12
collagen binding Hs molecular function 63.5 9.48e-12
extracellular region Hs cellular component 63.5 9.48e-12
proteinaceous extracellular matrix Hs cellular component 63.5 9.48e-12
collagen trimer Hs cellular component 63.5 9.48e-12
fibrillar collagen trimer Hs cellular component 55.5 5.09e-09
collagen type XIV trimer Hs cellular component 63.5 9.48e-12
extracellular space Hs cellular component 63.5 9.48e-12
intracellular Hs cellular component 55.5 5.09e-09
endoplasmic reticulum lumen Hs cellular component 63.5 9.48e-12
plasma membrane Hs cellular component 57.4 1.23e-09
integral component of plasma membrane Hs cellular component 57.4 1.23e-09
heparin binding Hs molecular function 55.5 5.09e-09
membrane Hs cellular component 57.4 1.23e-09
integral component of membrane Hs cellular component 57.4 1.23e-09
hydrolase activity Hs molecular function 57.4 1.23e-09
phosphatase activity Hs molecular function 57.4 1.23e-09
protein binding, bridging Hs molecular function 63.5 9.48e-12
extracellular matrix Hs cellular component 63.5 9.48e-12
specific granule membrane Hs cellular component 57.4 1.23e-09
receptor complex Hs cellular component 57.4 1.23e-09
extracellular exosome Hs cellular component 63.5 9.48e-12
tertiary granule membrane Hs cellular component 57.4 1.23e-09

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 5.12E-18