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Gene Card

Best human hits

PSMC2; PSMC5; PSMC6

Species

C.savignyi

Unique Gene ID

Cisavi.g00000461

Gene Model ID

Cisavi.CG.ENS81.R1.2804918-2810343

Location

R1:2804917..2810343

Transcript Models and Sequences

  Cisavi.CG.ENS81.R1.2804918-2810343.17780.t
Cisavi.CG.ENS81.R1.2804918-2810343.17781.t
Cisavi.CG.ENS81.R1.2804918-2810343.17782.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
ATPase_AAA_core Pfam ATPase, AAA-type, core
AAA+_ATPase SMART AAA+ ATPase domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
26S_Psome_P45-like TIGRFAM 26S proteasome regulatory subunit P45-like
PSMC6 PANTHER 26S proteasome regulatory subunit 10B
ATPase_AAA_CS ProSitePatterns ATPase, AAA-type, conserved site

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

46 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
nucleotide binding Hs molecular function
protein polyubiquitination Hs biological process
proteasome complex Hs cellular component
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
ubiquitin-dependent protein catabolic process Hs biological process
proteasome regulatory particle, base subcomplex Hs cellular component
negative regulation of G2/M transition of mitotic cell cycle Hs biological process
membrane Hs cellular component
inclusion body Hs cellular component
protein deubiquitination Hs biological process
hydrolase activity Hs molecular function
ATPase activity Hs molecular function
TBP-class protein binding Hs molecular function
proteasome accessory complex Hs cellular component
protein catabolic process Hs biological process
ubiquitin-dependent ERAD pathway Hs biological process
protein binding, bridging Hs molecular function
anaphase-promoting complex-dependent catabolic process Hs biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
nuclear proteasome complex Hs cellular component
cytosolic proteasome complex Hs cellular component
tumor necrosis factor-mediated signaling pathway Hs biological process
proteasome-activating ATPase activity Hs molecular function
NIK/NF-kappaB signaling Hs biological process
Fc-epsilon receptor signaling pathway Hs biological process
identical protein binding Hs molecular function
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
regulation of mRNA stability Hs biological process
post-translational protein modification Hs biological process
positive regulation of RNA polymerase II transcriptional preinitiation complex assembly Hs biological process
T cell receptor signaling pathway Hs biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Hs biological process
transmembrane transport Hs biological process
Wnt signaling pathway, planar cell polarity pathway Hs biological process
extracellular exosome Hs cellular component
interleukin-1-mediated signaling pathway Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of proteasomal protein catabolic process Hs biological process
regulation of hematopoietic stem cell differentiation Hs biological process

GO (Blast)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 720 0.0
proteasome complex Hs cellular component 720 0.0
P-body Hs cellular component 340 1.98e-114
receptor binding Hs molecular function 331 2.09e-111
protein binding Hs molecular function 720 0.0
ATP binding Hs molecular function 720 0.0
extracellular region Hs cellular component 340 1.98e-114
nucleus Hs cellular component 720 0.0
nucleoplasm Hs cellular component 720 0.0
cytoplasm Hs cellular component 720 0.0
cytosol Hs cellular component 720 0.0
proteasome regulatory particle Hs cellular component 331 2.09e-111
transcription factor binding Hs molecular function 331 2.09e-111
proteasome regulatory particle, base subcomplex Hs cellular component 720 0.0
membrane Hs cellular component 720 0.0
inclusion body Hs cellular component 720 0.0
hydrolase activity Hs molecular function 720 0.0
ATPase activity Hs molecular function 720 0.0
TBP-class protein binding Hs molecular function 720 0.0
proteasome accessory complex Hs cellular component 720 0.0
protein binding, bridging Hs molecular function 720 0.0
cytoplasmic vesicle Hs cellular component 331 2.09e-111
thyrotropin-releasing hormone receptor binding Hs molecular function 331 2.09e-111
nuclear proteasome complex Hs cellular component 720 0.0
cytosolic proteasome complex Hs cellular component 720 0.0
secretory granule lumen Hs cellular component 340 1.98e-114
proteasome-activating ATPase activity Hs molecular function 720 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 340 1.98e-114
identical protein binding Hs molecular function 720 0.0
extracellular exosome Hs cellular component 720 0.0
blood microparticle Hs cellular component 331 2.09e-111
postsynapse Hs cellular component 331 2.09e-111
ficolin-1-rich granule lumen Hs cellular component 340 1.98e-114

GO (InterProScan)

5 results

GO Term Analysis Type e-value
ATP binding Pfam molecular function 6.5E-43
cytoplasm TIGRFAM cellular component 1.1E-135
hydrolase activity TIGRFAM molecular function 1.1E-135
protein catabolic process TIGRFAM biological process 1.1E-135
proteasome-activating ATPase activity PANTHER molecular function 1.0E-218

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