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GENE CARD

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Gene Card

Best human hits

DDX10; DDX18; DDX55

Species

C.savignyi

Unique Gene ID

Cisavi.g00000757

Gene Model ID

Cisavi.CG.ENS81.R1.597154-599373

Location

R1:597153..599373

Transcript Models and Sequences

  Cisavi.CG.ENS81.R1.597154-599373.05137.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C Pfam Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C SMART Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_C ProSiteProfiles Helicase, C-terminal
DUF4217 Pfam Domain of unknown function DUF4217
DUF4217 SMART Domain of unknown function DUF4217
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C CDD Helicase, C-terminal
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
ATP binding Hs molecular function
nucleolus Hs cellular component
cytoplasm Hs cellular component
RNA secondary structure unwinding Hs biological process
hydrolase activity Hs molecular function
anterior head development Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 598 0.0
nucleic acid binding Hs molecular function 598 0.0
RNA binding Hs molecular function 598 0.0
RNA helicase activity Hs molecular function 598 0.0
ATP-dependent RNA helicase activity Hs molecular function 598 0.0
helicase activity Hs molecular function 598 0.0
protein binding Hs molecular function 357 9.03e-116
ATP binding Hs molecular function 598 0.0
nucleus Hs cellular component 357 9.03e-116
chromosome Hs cellular component 357 9.03e-116
nucleolus Hs cellular component 598 0.0
cytoplasm Hs cellular component 598 0.0
cytosol Hs cellular component 279 2.29e-86
membrane Hs cellular component 357 9.03e-116
hydrolase activity Hs molecular function 598 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 4.8E-44
ATP binding Pfam molecular function 4.8E-44