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GENE CARD

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Gene Card

Best human hits

RPAP3; SPAG1; TOMM34

Species

C.savignyi

Unique Gene ID

Cisavi.g00000999

Gene Model ID

Cisavi.CG.ENS81.R11.1220304-1225749

Location

R11:1220303..1225749

Transcript Models and Sequences

  Cisavi.CG.ENS81.R11.1220304-1225749.15387.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
TPR_repeat SMART Tetratricopeptide repeat
TPR_repeat ProSiteProfiles Tetratricopeptide repeat
TPR-like_helical_dom_sf SUPERFAMILY Tetratricopeptide-like helical domain superfamily
TPR-like_helical_dom_sf Gene3D Tetratricopeptide-like helical domain superfamily
TPR_repeat Pfam Tetratricopeptide repeat
TPR-contain_dom ProSiteProfiles Tetratricopeptide repeat-containing domain
TPR_2 Pfam Tetratricopeptide repeat 2
RPAP3-like_C Pfam RNA-polymerase II-associated protein 3-like, C-terminal domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

8 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
single fertilization Hs biological process
hydrolase activity Hs molecular function
axonemal dynein complex assembly Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 422 2.31e-133
protein binding Hs molecular function 422 2.31e-133
GTP binding Hs molecular function 422 2.31e-133
nucleus Hs cellular component 194 1.27e-55
nucleoplasm Hs cellular component 194 1.27e-55
cytoplasm Hs cellular component 422 2.31e-133
mitochondrion Hs cellular component 194 1.27e-55
mitochondrial outer membrane Hs cellular component 194 1.27e-55
cytosol Hs cellular component 422 2.31e-133
membrane Hs cellular component 194 1.27e-55
integral component of membrane Hs cellular component 194 1.27e-55
hydrolase activity Hs molecular function 422 2.31e-133
heat shock protein binding Hs molecular function 194 1.27e-55
R2TP complex Hs cellular component 91.7 7.56e-19

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Gene3D molecular function 7.2E-39