Aniseed - Gene card

Gene Card

Best human hits

EN1; EN2; HOXC4

Species

C.savignyi

Unique Gene ID

Cisavi.g00001276

Gene Model ID

Cisavi.CG.ENS81.R117.1001883-1003402

Location

R117:1001882..1003402

Transcript Models and Sequences

Cisavi.CG.ENS81.R117.1001883-1003402.13968.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Homeobox_engrailed	PRINTS	Homeobox domain engrailed
Homeobox-engrailed_C-terminal	Pfam	Homeobox engrailed, C-terminal
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	SMART	Homeobox domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
multicellular organism development	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
brain development	Hs	biological process
protein C-terminus binding	Hs	molecular function
pituitary gland development	Hs	biological process
otic vesicle formation	Hs	biological process
nose development	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
protein N-terminus binding	Hs	molecular function
forebrain morphogenesis	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	137	4.30e-37
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	67.4	8.04e-13
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	139	1.99e-38
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	137	4.30e-37
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	67.4	8.04e-13
fibrillar center	Hs	cellular component	139	1.99e-38
DNA binding	Hs	molecular function	139	1.99e-38
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	67.4	8.04e-13
protein binding	Hs	molecular function	67.4	8.04e-13
nucleus	Hs	cellular component	139	1.99e-38
nucleolus	Hs	cellular component	139	1.99e-38
membrane	Hs	cellular component	139	1.99e-38
sequence-specific DNA binding	Hs	molecular function	139	1.99e-38
HMG box domain binding	Hs	molecular function	67.4	8.04e-13

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	1.2E-19
nucleus	PRINTS	cellular component	5.4E-10
regulation of transcription, DNA-templated	ProSitePatterns	biological process
multicellular organism development	PRINTS	biological process	5.4E-10
sequence-specific DNA binding	ProSitePatterns	molecular function