Aniseed - Gene card

Gene Card

Best human hits

ASCL2; ASCL4; ASCL5

Species

C.savignyi

Unique Gene ID

Cisavi.g00001593

Gene Model ID

Cisavi.CG.ENS81.R122.525952-527239

Location

R122:525951..527239

Transcript Models and Sequences

Cisavi.CG.ENS81.R122.525952-527239.05775.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
bHLH_dom	CDD	Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf	Gene3D	Helix-loop-helix DNA-binding domain superfamily
HLH_DNA-bd_sf	SUPERFAMILY	Helix-loop-helix DNA-binding domain superfamily
bHLH_dom	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom	Pfam	Myc-type, basic helix-loop-helix (bHLH) domain
MASH1/Ascl1a-like	PANTHER	Achaete-scute transcription factor-related
bHLH_dom	SMART	Myc-type, basic helix-loop-helix (bHLH) domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
multicellular organism development	Hs	biological process
cell differentiation	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
protein dimerization activity	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcription factor complex	Hs	cellular component
transcription from RNA polymerase II promoter	Hs	biological process
transcription factor binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
oogenesis	Hs	biological process
oocyte development	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	64.7	2.66e-12
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	62.8	9.55e-12
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	62.8	9.55e-12
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	62.8	9.55e-12
DNA binding	Hs	molecular function	64.7	2.66e-12
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	64.7	2.66e-12
protein binding	Hs	molecular function	60.1	6.32e-11
nucleus	Hs	cellular component	64.7	2.66e-12
cytoplasm	Hs	cellular component	62.8	9.55e-12
sequence-specific DNA binding	Hs	molecular function	62.8	9.55e-12
protein dimerization activity	Hs	molecular function	64.7	2.66e-12
E-box binding	Hs	molecular function	62.8	9.55e-12
RNA polymerase II transcription factor complex	Hs	cellular component	64.7	2.66e-12

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	PANTHER	molecular function	2.5E-27
regulation of transcription from RNA polymerase II promoter	PANTHER	biological process	2.5E-27
protein dimerization activity	Gene3D	molecular function	1.9E-21