Aniseed - Gene card

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Gene 'Cisavi.CG.ENS81.R132...'

Gene Card

Best human hits

FUBP1; FUBP3; KHSRP

Species

C.savignyi

Unique Gene ID

Cisavi.g00001941

Gene Model ID

Cisavi.CG.ENS81.R132.239382-248708

Location

R132:239381..248708

Transcript Models and Sequences

Cisavi.CG.ENS81.R132.239382-248708.05579.t
Cisavi.CG.ENS81.R132.239382-248708.05580.t
Cisavi.CG.ENS81.R132.239382-248708.05581.t
Cisavi.CG.ENS81.R132.239382-248708.05582.t
Cisavi.CG.ENS81.R132.239382-248708.05583.t
Cisavi.CG.ENS81.R132.239382-248708.05584.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
FUBP_C	Pfam	Far upstream element-binding protein, C-terminal
KH_dom_type_1_sf	Gene3D	K Homology domain, type 1 superfamily
KH_dom	SMART	K Homology domain
KH_dom_type_1_sf	SUPERFAMILY	K Homology domain, type 1 superfamily
KH_dom_type_1	Pfam	K Homology domain, type 1
KH_sf_prok-type	SUPERFAMILY	K homology domain superfamily, prokaryotic type

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

32 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
exosome (RNase complex)	Hs	cellular component
RNA splicing, via transesterification reactions	Hs	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
mRNA processing	Hs	biological process
mRNA catabolic process	Hs	biological process
RNA splicing	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
miRNA metabolic process	Hs	biological process
positive regulation of gene expression	Hs	biological process
membrane	Hs	cellular component
mRNA 3'-UTR AU-rich region binding	Hs	molecular function
regulation of mRNA stability	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
mRNA transport	Hs	biological process
positive regulation of mRNA catabolic process	Hs	biological process
3'-UTR-mediated mRNA destabilization	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
exosome (RNase complex)	Hs	cellular component	229	8.81e-67
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	268	6.04e-83
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	268	6.04e-83
nucleic acid binding	Hs	molecular function	268	6.04e-83
DNA binding	Hs	molecular function	268	6.04e-83
single-stranded DNA binding	Hs	molecular function	248	2.24e-74
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	248	2.24e-74
RNA binding	Hs	molecular function	268	6.04e-83
mRNA binding	Hs	molecular function	229	8.81e-67
protein binding	Hs	molecular function	268	6.04e-83
nucleus	Hs	cellular component	268	6.04e-83
nucleoplasm	Hs	cellular component	248	2.24e-74
cytoplasm	Hs	cellular component	268	6.04e-83
cytosol	Hs	cellular component	229	8.81e-67
cytoplasmic stress granule	Hs	cellular component	229	8.81e-67
membrane	Hs	cellular component	268	6.04e-83
mRNA 3'-UTR AU-rich region binding	Hs	molecular function	229	8.81e-67

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	1.9E-12
RNA binding	Gene3D	molecular function	1.0E-25
regulation of transcription, DNA-templated	Pfam	biological process	2.8E-5