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GENE CARD

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Gene Card

Best human hits

COL11A2

Species

C.savignyi

Unique Gene ID

Cisavi.g00002338

Gene Model ID

Cisavi.CG.ENS81.R143.1552530-1586469

Location

R143:1552529..1586469

Transcript Models and Sequences

  Cisavi.CG.ENS81.R143.1552530-1586469.04412.t
Cisavi.CG.ENS81.R143.1552530-1586469.04413.t
Cisavi.CG.ENS81.R143.1552530-1586469.04414.t
Cisavi.CG.ENS81.R143.1552530-1586469.04415.t
Cisavi.CG.ENS81.R143.1552530-1586469.04416.t
Cisavi.CG.ENS81.R143.1552530-1586469.04417.t
Cisavi.CG.ENS81.R143.1552530-1586469.04418.t
Cisavi.CG.ENS81.R143.1552530-1586469.04419.t
Cisavi.CG.ENS81.R143.1552530-1586469.04420.t
Cisavi.CG.ENS81.R143.1552530-1586469.04421.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Fib_collagen_C ProDom Fibrillar collagen, C-terminal
Fib_collagen_C SMART Fibrillar collagen, C-terminal
Fib_collagen_C ProSiteProfiles Fibrillar collagen, C-terminal
Collagen Pfam Collagen triple helix repeat
Fib_collagen_C Pfam Fibrillar collagen, C-terminal

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

54 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
skeletal system development Hs biological process
extracellular matrix structural constituent Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
collagen trimer Hs cellular component
collagen type XI trimer Hs cellular component
endoplasmic reticulum lumen Hs cellular component
ribosome Hs cellular component
sensory perception of sound Hs biological process
extracellular matrix structural constituent conferring tensile strength Hs molecular function
collagen fibril organization Hs biological process
collagen catabolic process Hs biological process
protein binding, bridging Hs molecular function
metal ion binding Hs molecular function
cartilage development Hs biological process
palate development Hs biological process
soft palate development Hs biological process
cartilage condensation Hs biological process
ossification Hs biological process
blood vessel development Hs biological process
osteoblast differentiation Hs biological process
tissue homeostasis Hs biological process
chondrocyte differentiation Hs biological process
chondrocyte development Hs biological process
heart morphogenesis Hs biological process
integrin binding Hs molecular function
collagen binding Hs molecular function
collagen type V trimer Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
proteoglycan metabolic process Hs biological process
cell adhesion Hs biological process
cell-matrix adhesion Hs biological process
visual perception Hs biological process
heparin binding Hs molecular function
cell migration Hs biological process
extracellular matrix organization Hs biological process
extracellular matrix Hs cellular component
collagen biosynthetic process Hs biological process
wound healing, spreading of epidermal cells Hs biological process
endodermal cell differentiation Hs biological process
tendon development Hs biological process
inner ear morphogenesis Hs biological process
proteoglycan binding Hs molecular function
skin development Hs biological process
platelet-derived growth factor binding Hs molecular function
eye morphogenesis Hs biological process
skeletal system morphogenesis Hs biological process
extracellular matrix binding Hs molecular function
detection of mechanical stimulus involved in sensory perception of sound Hs biological process
ventricular cardiac muscle tissue morphogenesis Hs biological process
extracellular exosome Hs cellular component
supramolecular fiber organization Hs biological process

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
extracellular matrix structural constituent Hs molecular function 801 0.0
protein binding Hs molecular function 801 0.0
extracellular region Hs cellular component 801 0.0
proteinaceous extracellular matrix Hs cellular component 801 0.0
collagen trimer Hs cellular component 801 0.0
collagen type XI trimer Hs cellular component 801 0.0
endoplasmic reticulum lumen Hs cellular component 801 0.0
ribosome Hs cellular component 785 0.0
extracellular matrix structural constituent conferring tensile strength Hs molecular function 801 0.0
protein binding, bridging Hs molecular function 801 0.0
metal ion binding Hs molecular function 801 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
extracellular matrix structural constituent Pfam molecular function 1.4E-64

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