Aniseed - Gene card

Gene Card

Best human hits

POU4F1; POU4F2; POU4F3

Species

C.savignyi

Unique Gene ID

Cisavi.g00003914

Gene Model ID

Cisavi.CG.ENS81.R19.4764818-4767613

Location

R19:4764817..4767613

Transcript Models and Sequences

Cisavi.CG.ENS81.R19.4764818-4767613.19480.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
Homeobox_dom	CDD	Homeobox domain
POU	PRINTS	POU domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	Pfam	Homeobox domain
POU_dom	ProSitePatterns	POU-specific domain
Homeobox_dom	SMART	Homeobox domain
POU_dom	Pfam	POU-specific domain
POU_dom	SMART	POU-specific domain
Cro/C1-type_HTH	CDD	Cro/C1-type helix-turn-helix domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
POU_dom	ProSiteProfiles	POU-specific domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Lambda_DNA-bd_dom_sf	SUPERFAMILY	Lambda repressor-like, DNA-binding domain superfamily

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	279	1.87e-90
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	288	3.02e-95
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	279	1.87e-90
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	288	3.02e-95
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	288	3.02e-95
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	280	4.52e-91
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	279	1.87e-90
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	288	3.02e-95
DNA binding	Hs	molecular function	288	3.02e-95
chromatin binding	Hs	molecular function	280	4.52e-91
single-stranded DNA binding	Hs	molecular function	279	1.87e-90
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	288	3.02e-95
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	279	1.87e-90
transcription coactivator activity	Hs	molecular function	280	4.52e-91
transcription corepressor activity	Hs	molecular function	280	4.52e-91
nucleus	Hs	cellular component	288	3.02e-95
nucleoplasm	Hs	cellular component	288	3.02e-95
cytoplasm	Hs	cellular component	288	3.02e-95
plasma membrane	Hs	cellular component	280	4.52e-91
membrane	Hs	cellular component	280	4.52e-91
nuclear speck	Hs	cellular component	280	4.52e-91
neuron projection	Hs	cellular component	279	1.87e-90
sequence-specific DNA binding	Hs	molecular function	288	3.02e-95
GTPase binding	Hs	molecular function	279	1.87e-90
promoter-specific chromatin binding	Hs	molecular function	280	4.52e-91

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	3.5E-34
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	5.7E-49
regulation of transcription, DNA-templated	SMART	biological process	5.7E-49
sequence-specific DNA binding	CDD	molecular function	0.00758073