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GENE CARD

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  1. Gene 'Cisavi.CG.ENS81.R23....'

Gene Card

Best human hits

TUBB2A; TUBB2B; TUBB4B

Species

C.savignyi

Unique Gene ID

Cisavi.g00004782

Gene Model ID

Cisavi.CG.ENS81.R23.580169-583842

Location

R23:580168..583842

Transcript Models and Sequences

  Cisavi.CG.ENS81.R23.580169-583842.00198.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term Analysis Definition
Tubulin_C Gene3D Tubulin, C-terminal
Tubulin_CS ProSitePatterns Tubulin, conserved site
Beta_tubulin PANTHER Beta tubulin
Tubulin/FtsZ_GTPase_sf SUPERFAMILY Tubulin/FtsZ, GTPase domain superfamily
Tubulin/FtsZ_2-layer-sand-dom SMART Tubulin/FtsZ, 2-layer sandwich domain
Tubulin/FtsZ_2-layer-sand-dom Pfam Tubulin/FtsZ, 2-layer sandwich domain
Tubulin PRINTS Tubulin
Tubulin/FtsZ_GTPase_sf Gene3D Tubulin/FtsZ, GTPase domain superfamily
Tubulin/FtsZ_C_sf Gene3D Tubulin/FtsZ, C-terminal domain superfamily
Tubulin_FtsZ_GTPase SMART Tubulin/FtsZ, GTPase domain
Tubulin PANTHER Tubulin
Tub_FtsZ_C SUPERFAMILY Tubulin/FtsZ, C-terminal
Beta_tubulin PRINTS Beta tubulin
Tubulin_FtsZ_GTPase Pfam Tubulin/FtsZ, GTPase domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
protein binding Hs molecular function
extracellular region Hs cellular component
extracellular exosome Hs cellular component
exo-alpha-sialidase activity Hs molecular function
lysosome Hs cellular component
lysosomal membrane Hs cellular component
plasma membrane Hs cellular component
carbohydrate metabolic process Hs biological process
lipid metabolic process Hs biological process
glycosphingolipid metabolic process Hs biological process
ganglioside catabolic process Hs biological process
metabolic process Hs biological process
oligosaccharide catabolic process Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
lipid catabolic process Hs biological process
hydrolase activity Hs molecular function
hydrolase activity, acting on glycosyl bonds Hs molecular function
alpha-sialidase activity Hs molecular function
cell junction Hs cellular component
cytoplasmic vesicle Hs cellular component
specific granule lumen Hs cellular component
lysosomal lumen Hs cellular component
intracellular membrane-bounded organelle Hs cellular component
exo-alpha-(2->3)-sialidase activity Hs molecular function
exo-alpha-(2->6)-sialidase activity Hs molecular function
exo-alpha-(2->8)-sialidase activity Hs molecular function

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 510 0.0
double-stranded RNA binding Hs molecular function 509 2.22e-180
GTPase activity Hs molecular function 510 0.0
structural constituent of cytoskeleton Hs molecular function 510 0.0
protein binding Hs molecular function 510 0.0
GTP binding Hs molecular function 510 0.0
extracellular region Hs cellular component 509 2.22e-180
nucleus Hs cellular component 510 0.0
cytoplasm Hs cellular component 510 0.0
cytosol Hs cellular component 509 2.22e-180
cytoskeleton Hs cellular component 510 0.0
microtubule Hs cellular component 510 0.0
microtubule cytoskeleton Hs cellular component 510 0.0
azurophil granule lumen Hs cellular component 509 2.22e-180
MHC class I protein binding Hs molecular function 509 2.22e-180
myelin sheath Hs cellular component 509 2.22e-180
protein heterodimerization activity Hs molecular function 510 0.0
unfolded protein binding Hs molecular function 509 2.22e-180
extracellular exosome Hs cellular component 509 2.22e-180
extracellular vesicle Hs cellular component 509 2.22e-180

GO (InterProScan)

5 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 1.4E-62
structural constituent of cytoskeleton PANTHER molecular function 3.2E-179
GTP binding PANTHER molecular function 3.2E-179
microtubule PANTHER cellular component 3.2E-179
microtubule-based process PANTHER biological process 3.2E-179