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GENE CARD

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Gene Card

Best human hits

DDX58; DHX58; IFIH1

Species

C.savignyi

Unique Gene ID

Cisavi.g00005725

Gene Model ID

Cisavi.CG.ENS81.R27.2365619-2367925

Location

R27:2365618..2367925

Transcript Models and Sequences

  Cisavi.CG.ENS81.R27.2365619-2367925.19130.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
RLR_CTR ProSiteProfiles RIG-I-like receptor, C-terminal regulatory domain
RLR_CTR Pfam RIG-I-like receptor, C-terminal regulatory domain
RLR_C_sf Gene3D RIG-I-like receptor, C-terminal domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
positive regulation of defense response to virus by host Hs biological process
immune system process Hs biological process
nucleic acid binding Hs molecular function
double-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
double-stranded RNA binding Hs molecular function
single-stranded RNA binding Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
plasma membrane Hs cellular component
bicellular tight junction Hs cellular component
zinc ion binding Hs molecular function
detection of virus Hs biological process
response to virus Hs biological process
positive regulation of gene expression Hs biological process
actin cytoskeleton Hs cellular component
membrane Hs cellular component
viral process Hs biological process
protein deubiquitination Hs biological process
hydrolase activity Hs molecular function
cell junction Hs cellular component
regulation of cell migration Hs biological process
ubiquitin protein ligase binding Hs molecular function
negative regulation of type I interferon production Hs biological process
ruffle membrane Hs cellular component
identical protein binding Hs molecular function
positive regulation of transcription factor import into nucleus Hs biological process
cell projection Hs cellular component
response to exogenous dsRNA Hs biological process
innate immune response Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
positive regulation of sequence-specific DNA binding transcription factor activity Hs biological process
defense response to virus Hs biological process

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 63.2 6.27e-12
nucleic acid binding Hs molecular function 61.2 3.24e-11
DNA binding Hs molecular function 63.2 6.27e-12
double-stranded DNA binding Hs molecular function 61.2 3.24e-11
RNA binding Hs molecular function 63.2 6.27e-12
double-stranded RNA binding Hs molecular function 63.2 6.27e-12
single-stranded RNA binding Hs molecular function 63.2 6.27e-12
helicase activity Hs molecular function 63.2 6.27e-12
protein binding Hs molecular function 63.2 6.27e-12
ATP binding Hs molecular function 63.2 6.27e-12
nucleus Hs cellular component 52.0 4.91e-08
cytoplasm Hs cellular component 63.2 6.27e-12
cytosol Hs cellular component 61.2 3.24e-11
cytoskeleton Hs cellular component 61.2 3.24e-11
plasma membrane Hs cellular component 61.2 3.24e-11
bicellular tight junction Hs cellular component 61.2 3.24e-11
zinc ion binding Hs molecular function 63.2 6.27e-12
actin cytoskeleton Hs cellular component 61.2 3.24e-11
membrane Hs cellular component 61.2 3.24e-11
hydrolase activity Hs molecular function 63.2 6.27e-12
cell junction Hs cellular component 61.2 3.24e-11
ubiquitin protein ligase binding Hs molecular function 61.2 3.24e-11
ruffle membrane Hs cellular component 61.2 3.24e-11
identical protein binding Hs molecular function 61.2 3.24e-11
cell projection Hs cellular component 61.2 3.24e-11
ribonucleoprotein complex binding Hs molecular function 52.0 4.91e-08
metal ion binding Hs molecular function 63.2 6.27e-12

GO (InterProScan)

No result

GO Term Analysis Type e-value

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