Aniseed - Gene card

Gene Card

Best human hits

PABPC1; PABPC3; PABPC4

Species

C.savignyi

Unique Gene ID

Cisavi.g00005862

Gene Model ID

Cisavi.CG.ENS81.R283.275384-287631

Location

R283:275383..287631

Transcript Models and Sequences

Cisavi.CG.ENS81.R283.275384-287631.05271.t
Cisavi.CG.ENS81.R283.275384-287631.05272.t
Cisavi.CG.ENS81.R283.275384-287631.05273.t
Cisavi.CG.ENS81.R283.275384-287631.05274.t
Cisavi.CG.ENS81.R283.275384-287631.05275.t
Cisavi.CG.ENS81.R283.275384-287631.05276.t
Cisavi.CG.ENS81.R283.275384-287631.05277.t
Cisavi.CG.ENS81.R283.275384-287631.05278.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
PABP_HYD	SMART	Polyadenylate-binding protein/Hyperplastic disc protein
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
PABP-dom	SUPERFAMILY	PABC (PABP) domain
PABP_1234	TIGRFAM	Polyadenylate binding protein, human types 1, 2, 3, 4
PABP_HYD	ProSiteProfiles	Polyadenylate-binding protein/Hyperplastic disc protein
RRM_dom_euk	SMART	RNA recognition motif domain, eukaryote
RRM_dom	ProSiteProfiles	RNA recognition motif domain
PABP_HYD	Pfam	Polyadenylate-binding protein/Hyperplastic disc protein

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

45 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
spliceosomal complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
focal adhesion	Hs	cellular component
mRNA polyadenylation	Hs	biological process
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA catabolic process	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
blood coagulation	Hs	biological process
protein C-terminus binding	Hs	molecular function
poly(A) binding	Hs	molecular function
poly(U) RNA binding	Hs	molecular function
RNA splicing	Hs	biological process
translation activator activity	Hs	molecular function
cytoplasmic stress granule	Hs	cellular component
membrane	Hs	cellular component
mRNA metabolic process	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
gene silencing by RNA	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
regulation of mRNA stability	Hs	biological process
positive regulation of translation	Hs	biological process
mRNA stabilization	Hs	biological process
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
extracellular exosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Hs	biological process
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
oocyte maturation	Hs	biological process
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
chromatin remodeling	Hs	biological process
chromatin-mediated maintenance of transcription	Hs	biological process
nucleus localization	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
nucleic acid binding	Hs	molecular function	724
RNA binding	Hs	molecular function	724
mRNA binding	Hs	molecular function	724
mRNA 3'-UTR binding	Hs	molecular function	719
protein binding	Hs	molecular function	724
nucleus	Hs	cellular component	724
spliceosomal complex	Hs	cellular component	719
cytoplasm	Hs	cellular component	724
cytosol	Hs	cellular component	724
focal adhesion	Hs	cellular component	719
protein C-terminus binding	Hs	molecular function	719
poly(A) binding	Hs	molecular function	724
poly(U) RNA binding	Hs	molecular function	724
translation activator activity	Hs	molecular function	719
cytoplasmic stress granule	Hs	cellular component	724
membrane	Hs	cellular component	719
intracellular ribonucleoprotein complex	Hs	cellular component	724
cytoplasmic ribonucleoprotein granule	Hs	cellular component	719
extracellular exosome	Hs	cellular component	719
catalytic step 2 spliceosome	Hs	cellular component	719

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	6.52E-48
RNA binding	TIGRFAM	molecular function	2.9E-220