Aniseed - Gene card

Gene 'Haaura.CG.MTP2014.S4...' >

Gene Card

Best human hits

COL4A1; COL4A2; COL4A6

Species

C.savignyi

Unique Gene ID

Cisavi.g00006228

Gene Model ID

Cisavi.CG.ENS81.R30.1983319-1996169

Location

R30:1983318..1996169

Transcript Models and Sequences

Cisavi.CG.ENS81.R30.1983319-1996169.07571.t
Cisavi.CG.ENS81.R30.1983319-1996169.07572.t
Cisavi.CG.ENS81.R30.1983319-1996169.07573.t
Cisavi.CG.ENS81.R30.1983319-1996169.07574.t
Cisavi.CG.ENS81.R30.1983319-1996169.07575.t
Cisavi.CG.ENS81.R30.1983319-1996169.07576.t
Cisavi.CG.ENS81.R30.1983319-1996169.07577.t
Cisavi.CG.ENS81.R30.1983319-1996169.07578.t
Cisavi.CG.ENS81.R30.1983319-1996169.07579.t
Cisavi.CG.ENS81.R30.1983319-1996169.07580.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Collagen	Pfam	Collagen triple helix repeat
Collagen_IV_NC	SMART	Collagen IV, non-collagenous
Collagen_IV_NC_sf	Gene3D	Collagen IV, non-collagenous domain superfamily
CTDL_fold	SUPERFAMILY	C-type lectin fold
Collagen_IV_NC	ProSiteProfiles	Collagen IV, non-collagenous
Collagen_IV_NC	Pfam	Collagen IV, non-collagenous

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
angiogenesis	Hs	biological process
structural molecule activity	Hs	molecular function
extracellular matrix structural constituent	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
proteinaceous extracellular matrix	Hs	cellular component
collagen trimer	Hs	cellular component
collagen type IV trimer	Hs	cellular component
basement membrane	Hs	cellular component
extracellular space	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
transcription, DNA-templated	Hs	biological process
cell adhesion	Hs	biological process
aging	Hs	biological process
response to activity	Hs	biological process
negative regulation of angiogenesis	Hs	biological process
extracellular matrix organization	Hs	biological process
collagen catabolic process	Hs	biological process
extracellular matrix	Hs	cellular component
endodermal cell differentiation	Hs	biological process
collagen-activated tyrosine kinase receptor signaling pathway	Hs	biological process
extracellular exosome	Hs	cellular component
cellular response to amino acid stimulus	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
basal lamina	Hs	cellular component
glomerular basement membrane development	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
structural molecule activity	Hs	molecular function	644	0.0
extracellular matrix structural constituent	Hs	molecular function	644	0.0
protein binding	Hs	molecular function	605	0.0
extracellular region	Hs	cellular component	644	0.0
proteinaceous extracellular matrix	Hs	cellular component	644	0.0
collagen trimer	Hs	cellular component	644	0.0
collagen type IV trimer	Hs	cellular component	644	0.0
basement membrane	Hs	cellular component	644	0.0
extracellular space	Hs	cellular component	605	0.0
endoplasmic reticulum lumen	Hs	cellular component	644	0.0
extracellular matrix constituent conferring elasticity	Hs	molecular function	551	2.22e-167
extracellular matrix	Hs	cellular component	605	0.0
platelet-derived growth factor binding	Hs	molecular function	551	2.22e-167
extracellular exosome	Hs	cellular component	605	0.0

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
extracellular matrix structural constituent	Gene3D	molecular function	1.1E-108
collagen trimer	Gene3D	cellular component	1.1E-108