Aniseed - Gene card

Gene Card

Best human hits

MTREX; SKIV2L

Species

C.savignyi

Unique Gene ID

Cisavi.g00007938

Gene Model ID

Cisavi.CG.ENS81.R48.1003367-1012890

Location

R48:1003366..1012890

Transcript Models and Sequences

Cisavi.CG.ENS81.R48.1003367-1012890.16004.t
Cisavi.CG.ENS81.R48.1003367-1012890.16005.t
Cisavi.CG.ENS81.R48.1003367-1012890.16006.t
Cisavi.CG.ENS81.R48.1003367-1012890.16007.t
Cisavi.CG.ENS81.R48.1003367-1012890.16008.t
Cisavi.CG.ENS81.R48.1003367-1012890.16009.t
Cisavi.CG.ENS81.R48.1003367-1012890.16010.t
Cisavi.CG.ENS81.R48.1003367-1012890.16011.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
Ski2_C	Pfam	ATP-dependent RNA helicase Ski2, C-terminal
Helicase_C	ProSiteProfiles	Helicase, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase_C	CDD	Helicase, C-terminal
Helicase_C	SMART	Helicase, C-terminal
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
rRNA_proc-arch_dom	Pfam	rRNA-processing arch domain
Ski2_C	SMART	ATP-dependent RNA helicase Ski2, C-terminal
Helicase_C	Pfam	Helicase, C-terminal
Ski2-like	PIRSF	ATP-dependent RNA helicase Ski2-like
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
exosome (RNase complex)	Hs	cellular component
mRNA splicing, via spliceosome	Hs	biological process
maturation of 5.8S rRNA	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
RNA helicase activity	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
nucleolus	Hs	cellular component
rRNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA catabolic process	Hs	biological process
RNA splicing	Hs	biological process
hydrolase activity	Hs	molecular function
catalytic step 2 spliceosome	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	1337	0.0
exosome (RNase complex)	Hs	cellular component	1337	0.0
nucleic acid binding	Hs	molecular function	1337	0.0
RNA binding	Hs	molecular function	1337	0.0
RNA helicase activity	Hs	molecular function	1337	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	1337	0.0
helicase activity	Hs	molecular function	1337	0.0
protein binding	Hs	molecular function	1337	0.0
ATP binding	Hs	molecular function	1337	0.0
nucleus	Hs	cellular component	1337	0.0
nucleoplasm	Hs	cellular component	1337	0.0
spliceosomal complex	Hs	cellular component	1337	0.0
nucleolus	Hs	cellular component	1337	0.0
cytoplasm	Hs	cellular component	516	1.01e-163
cytosol	Hs	cellular component	516	1.01e-163
hydrolase activity	Hs	molecular function	1337	0.0
Ski complex	Hs	cellular component	516	1.01e-163
catalytic step 2 spliceosome	Hs	cellular component	1337	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	3.2E-16
RNA binding	PIRSF	molecular function	0.0
RNA helicase activity	PIRSF	molecular function	0.0
ATP binding	Pfam	molecular function	3.2E-16
RNA catabolic process	PIRSF	biological process	0.0