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Gene Card

Best human hits

CDX1; CDX2; CDX4

Species

C.savignyi

Unique Gene ID

Cisavi.g00008491

Gene Model ID

Cisavi.CG.ENS81.R49.860183-864395

Location

R49:860182..864395

Transcript Models and Sequences

  Cisavi.CG.ENS81.R49.860183-864395.13723.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom SMART Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom Pfam Homeobox domain
Homeobox_metazoa PRINTS Homeobox domain, metazoa
Homeobox_dom CDD Homeobox domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
condensed nuclear chromosome Hs cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
blood vessel development Hs biological process
DNA binding Hs molecular function
double-stranded DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
pattern specification process Hs biological process
positive regulation of cell proliferation Hs biological process
endosome to lysosome transport Hs biological process
animal organ morphogenesis Hs biological process
anterior/posterior axis specification Hs biological process
anterior/posterior pattern specification Hs biological process
regulation of somitogenesis Hs biological process
transcriptional repressor complex Hs cellular component
cell differentiation Hs biological process
somatic stem cell population maintenance Hs biological process
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
establishment or maintenance of epithelial cell apical/basal polarity Hs biological process
positive regulation of cell differentiation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
bone morphogenesis Hs biological process
intestinal epithelial cell differentiation Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
condensed nuclear chromosome Hs cellular component 129 1.91e-34
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 122 2.28e-32
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 129 1.91e-34
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 129 1.91e-34
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 122 2.28e-32
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 123 8.84e-33
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 129 1.91e-34
DNA binding Hs molecular function 129 1.91e-34
double-stranded DNA binding Hs molecular function 129 1.91e-34
transcription factor activity, sequence-specific DNA binding Hs molecular function 129 1.91e-34
transcription corepressor activity Hs molecular function 129 1.91e-34
protein binding Hs molecular function 123 8.84e-33
nucleus Hs cellular component 129 1.91e-34
nucleoplasm Hs cellular component 129 1.91e-34
transcriptional repressor complex Hs cellular component 129 1.91e-34
sequence-specific DNA binding Hs molecular function 129 1.91e-34
transcription regulatory region DNA binding Hs molecular function 123 8.84e-33

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 2.91E-21
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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